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B9K2C6

- B9K2C6_AGRVS

UniProt

B9K2C6 - B9K2C6_AGRVS

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

Avi_6007

Organism
Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4))
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 41 (01 Oct 2014)
      Sequence version 1 (24 Mar 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciAVIT311402:GH2Y-4144-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Avi_6007Imported
    OrganismiAgrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4))Imported
    Taxonomic identifieri311402 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacterium
    ProteomesiUP000001596: Chromosome 2

    PTM / Processingi

    Proteomic databases

    PRIDEiB9K2C6.

    Interactioni

    Protein-protein interaction databases

    STRINGi311402.Avi_6007.

    Structurei

    3D structure databases

    ProteinModelPortaliB9K2C6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiNRHKSGV.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B9K2C6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MMRAFATLLD RLVLTPSRNG KLKLLADYFA SVPDPDRGYA LGVLAGTLDL    50
    KTVKPALLKE LVLERMDPVL FGYSYDYVGD LAETISLVWD QDRGEKAEIA 100
    EPSLGEVVAL MQSLGRTQVR GAVRDLLDQL DTSGRFAFLK LATGGLRIGV 150
    SARLAKQALS EMSGKDVGEI ETLWHGLEPP YESLFAWLEG GADKPVLATP 200
    AIFHSVMLST PVGNGDLDGL DPADFAAEWK WDGIRVQLSR HGDTCRLYSR 250
    SGDDISGAFP DIVAAANFDG VIDGELLVGG TARSNQPTRS FSDLQQRLNR 300
    KSVTTKMLSD YPAFIRAYDL LFTGDQDVRN LGYEVRRGLL AEIVEKAPAT 350
    RFDLSPLISF SNWDELDALR HAPPDPVIEG VMIKRRDSIY QAGRAKGPWF 400
    KWKKQPLNVD AVLMYAQRGH GKRSSYYSDF TFGVWMQMPE GGSQLVPVGK 450
    AYFGFTDQEL EILDKYVRNN TIDRFGPVRS IRAEPDHGFV VEVAFEGLNR 500
    STRHKSGVAM RFPRISRLRS DKLPRDADRL ETLLHMLPA 539
    Length:539
    Mass (Da):59,918
    Last modified:March 24, 2009 - v1
    Checksum:i8A52CF8BFA034D47
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000634 Genomic DNA. Translation: ACM39024.1.
    RefSeqiWP_012654266.1. NC_011988.1.
    YP_002547740.1. NC_011988.1.

    Genome annotation databases

    EnsemblBacteriaiACM39024; ACM39024; Avi_6007.
    GeneIDi7380834.
    KEGGiavi:Avi_6007.
    PATRICi20824559. VBIAgrVit37146_1977.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000634 Genomic DNA. Translation: ACM39024.1 .
    RefSeqi WP_012654266.1. NC_011988.1.
    YP_002547740.1. NC_011988.1.

    3D structure databases

    ProteinModelPortali B9K2C6.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 311402.Avi_6007.

    Proteomic databases

    PRIDEi B9K2C6.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACM39024 ; ACM39024 ; Avi_6007 .
    GeneIDi 7380834.
    KEGGi avi:Avi_6007.
    PATRICi 20824559. VBIAgrVit37146_1977.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi NRHKSGV.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci AVIT311402:GH2Y-4144-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S4 / ATCC BAA-846Imported.

    Entry informationi

    Entry nameiB9K2C6_AGRVS
    AccessioniPrimary (citable) accession number: B9K2C6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 24, 2009
    Last sequence update: March 24, 2009
    Last modified: October 1, 2014
    This is version 41 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3