B9K2C6 (B9K2C6_AGRVS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL ACM39024.1

Gene names

Ordered Locus Names:

Avi_6007 EMBL ACM39024.1

Organism

Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4)) [Complete proteome] [HAMAP] EMBL ACM39024.1

Taxonomic identifier

311402 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Agrobacterium › Agrobacterium vitis

Protein attributes

Sequence length	539 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACM39024.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B9K2C6 [UniParc]. Last modified March 24, 2009. Version 1. Checksum: 8A52CF8BFA034D47	FASTA	539	59,918
	10 20 30 40 50 60 MMRAFATLLD RLVLTPSRNG KLKLLADYFA SVPDPDRGYA LGVLAGTLDL KTVKPALLKE 70 80 90 100 110 120 LVLERMDPVL FGYSYDYVGD LAETISLVWD QDRGEKAEIA EPSLGEVVAL MQSLGRTQVR 130 140 150 160 170 180 GAVRDLLDQL DTSGRFAFLK LATGGLRIGV SARLAKQALS EMSGKDVGEI ETLWHGLEPP 190 200 210 220 230 240 YESLFAWLEG GADKPVLATP AIFHSVMLST PVGNGDLDGL DPADFAAEWK WDGIRVQLSR 250 260 270 280 290 300 HGDTCRLYSR SGDDISGAFP DIVAAANFDG VIDGELLVGG TARSNQPTRS FSDLQQRLNR 310 320 330 340 350 360 KSVTTKMLSD YPAFIRAYDL LFTGDQDVRN LGYEVRRGLL AEIVEKAPAT RFDLSPLISF 370 380 390 400 410 420 SNWDELDALR HAPPDPVIEG VMIKRRDSIY QAGRAKGPWF KWKKQPLNVD AVLMYAQRGH 430 440 450 460 470 480 GKRSSYYSDF TFGVWMQMPE GGSQLVPVGK AYFGFTDQEL EILDKYVRNN TIDRFGPVRS 490 500 510 520 530 IRAEPDHGFV VEVAFEGLNR STRHKSGVAM RFPRISRLRS DKLPRDADRL ETLLHMLPA

References

[1]

"Genome sequences of three agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria." Slater S.C., Goldman B.S., Goodner B., Setubal J.C., Farrand S.K., Nester E.W., Burr T.J., Banta L., Dickerman A.W., Paulsen I., Otten L., Suen G., Welch R., Almeida N.F., Arnold F., Burton O.T., Du Z., Ewing A. , Godsy E., Heisel S., Houmiel K.L., Jhaveri J., Lu J., Miller N.M., Norton S., Chen Q., Phoolcharoen W., Ohlin V., Ondrusek D., Pride N., Stricklin S.L., Sun J., Wheeler C., Wilson L., Zhu H., Wood D.W. J. Bacteriol. 191:2501-2511(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: S4 / ATCC BAA-846.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000634 Genomic DNA. Translation: ACM39024.1.
RefSeq	YP_002547740.1. NC_011988.1.
3D structure databases
ProteinModelPortal	B9K2C6.
ModBase	Search...
Protein-protein interaction databases
STRING	311402.Avi_6007.
Proteomic databases
PRIDE	B9K2C6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACM39024; ACM39024; Avi_6007.
GeneID	7380834.
KEGG	avi:Avi_6007.
PATRIC	20824559. VBIAgrVit37146_1977.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	PRK09247.
Enzyme and pathway databases
BioCyc	AVIT311402:GH2Y-4144-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B9K2C6_AGRVS

Accession

Primary (citable) accession number: B9K2C6

Entry history

Integrated into UniProtKB/TrEMBL:	March 24, 2009
Last sequence update:	March 24, 2009
Last modified:	May 29, 2013
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)