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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

Avi_6007

Organism
Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4))
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseImported

Enzyme and pathway databases

BioCyciAVIT311402:GH2Y-4128-MONOMER

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Avi_6007Imported
OrganismiAgrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4))Imported
Taxonomic identifieri311402 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacterium
Proteomesi
  • UP000001596 Componenti: Chromosome 2

Interactioni

Protein-protein interaction databases

STRINGi311402.Avi_6007

Structurei

3D structure databases

ProteinModelPortaliB9K2C6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini306 – 436DNA_LIGASE_A3InterPro annotationAdd BLAST131

Phylogenomic databases

eggNOGiENOG4107QIM Bacteria
COG1793 LUCA
HOGENOMiHOG000036007
KOiK10747
OMAiWLFEESY
OrthoDBiPOG091H09SJ

Family and domain databases

InterProiView protein in InterPro
IPR026333 ATP_dep_DNA_lig_pp_1105_fam
IPR012309 DNA_ligase_ATP-dep_C
IPR012310 DNA_ligase_ATP-dep_cent
IPR016059 DNA_ligase_ATP-dep_CS
IPR012308 DNA_ligase_ATP-dep_N
IPR012340 NA-bd_OB-fold
PfamiView protein in Pfam
PF04679 DNA_ligase_A_C, 1 hit
PF01068 DNA_ligase_A_M, 1 hit
PF04675 DNA_ligase_A_N, 1 hit
SUPFAMiSSF50249 SSF50249, 1 hit
TIGRFAMsiTIGR04120 DNA_lig_bact, 1 hit
PROSITEiView protein in PROSITE
PS00697 DNA_LIGASE_A1, 1 hit
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Complete.

B9K2C6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMRAFATLLD RLVLTPSRNG KLKLLADYFA SVPDPDRGYA LGVLAGTLDL
60 70 80 90 100
KTVKPALLKE LVLERMDPVL FGYSYDYVGD LAETISLVWD QDRGEKAEIA
110 120 130 140 150
EPSLGEVVAL MQSLGRTQVR GAVRDLLDQL DTSGRFAFLK LATGGLRIGV
160 170 180 190 200
SARLAKQALS EMSGKDVGEI ETLWHGLEPP YESLFAWLEG GADKPVLATP
210 220 230 240 250
AIFHSVMLST PVGNGDLDGL DPADFAAEWK WDGIRVQLSR HGDTCRLYSR
260 270 280 290 300
SGDDISGAFP DIVAAANFDG VIDGELLVGG TARSNQPTRS FSDLQQRLNR
310 320 330 340 350
KSVTTKMLSD YPAFIRAYDL LFTGDQDVRN LGYEVRRGLL AEIVEKAPAT
360 370 380 390 400
RFDLSPLISF SNWDELDALR HAPPDPVIEG VMIKRRDSIY QAGRAKGPWF
410 420 430 440 450
KWKKQPLNVD AVLMYAQRGH GKRSSYYSDF TFGVWMQMPE GGSQLVPVGK
460 470 480 490 500
AYFGFTDQEL EILDKYVRNN TIDRFGPVRS IRAEPDHGFV VEVAFEGLNR
510 520 530
STRHKSGVAM RFPRISRLRS DKLPRDADRL ETLLHMLPA
Length:539
Mass (Da):59,918
Last modified:March 24, 2009 - v1
Checksum:i8A52CF8BFA034D47
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000634 Genomic DNA Translation: ACM39024.1

Genome annotation databases

EnsemblBacteriaiACM39024; ACM39024; Avi_6007
KEGGiavi:Avi_6007

Similar proteinsi

Entry informationi

Entry nameiB9K2C6_AGRVS
AccessioniPrimary (citable) accession number: B9K2C6
Entry historyiIntegrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: May 23, 2018
This is version 60 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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