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B9K2C6

- B9K2C6_AGRVS

UniProt

B9K2C6 - B9K2C6_AGRVS

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Protein
Submitted name:

ATP-dependent DNA ligase

Gene
Avi_6007
Organism
Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4))
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciAVIT311402:GH2Y-4144-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Avi_6007Imported
OrganismiAgrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4))Imported
Taxonomic identifieri311402 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacterium
ProteomesiUP000001596: Chromosome 2

PTM / Processingi

Proteomic databases

PRIDEiB9K2C6.

Interactioni

Protein-protein interaction databases

STRINGi311402.Avi_6007.

Structurei

3D structure databases

ProteinModelPortaliB9K2C6.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiNRHKSGV.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B9K2C6-1 [UniParc]FASTAAdd to Basket

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MMRAFATLLD RLVLTPSRNG KLKLLADYFA SVPDPDRGYA LGVLAGTLDL    50
KTVKPALLKE LVLERMDPVL FGYSYDYVGD LAETISLVWD QDRGEKAEIA 100
EPSLGEVVAL MQSLGRTQVR GAVRDLLDQL DTSGRFAFLK LATGGLRIGV 150
SARLAKQALS EMSGKDVGEI ETLWHGLEPP YESLFAWLEG GADKPVLATP 200
AIFHSVMLST PVGNGDLDGL DPADFAAEWK WDGIRVQLSR HGDTCRLYSR 250
SGDDISGAFP DIVAAANFDG VIDGELLVGG TARSNQPTRS FSDLQQRLNR 300
KSVTTKMLSD YPAFIRAYDL LFTGDQDVRN LGYEVRRGLL AEIVEKAPAT 350
RFDLSPLISF SNWDELDALR HAPPDPVIEG VMIKRRDSIY QAGRAKGPWF 400
KWKKQPLNVD AVLMYAQRGH GKRSSYYSDF TFGVWMQMPE GGSQLVPVGK 450
AYFGFTDQEL EILDKYVRNN TIDRFGPVRS IRAEPDHGFV VEVAFEGLNR 500
STRHKSGVAM RFPRISRLRS DKLPRDADRL ETLLHMLPA 539
Length:539
Mass (Da):59,918
Last modified:March 24, 2009 - v1
Checksum:i8A52CF8BFA034D47
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000634 Genomic DNA. Translation: ACM39024.1.
RefSeqiWP_012654266.1. NC_011988.1.
YP_002547740.1. NC_011988.1.

Genome annotation databases

EnsemblBacteriaiACM39024; ACM39024; Avi_6007.
GeneIDi7380834.
KEGGiavi:Avi_6007.
PATRICi20824559. VBIAgrVit37146_1977.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000634 Genomic DNA. Translation: ACM39024.1 .
RefSeqi WP_012654266.1. NC_011988.1.
YP_002547740.1. NC_011988.1.

3D structure databases

ProteinModelPortali B9K2C6.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 311402.Avi_6007.

Proteomic databases

PRIDEi B9K2C6.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACM39024 ; ACM39024 ; Avi_6007 .
GeneIDi 7380834.
KEGGi avi:Avi_6007.
PATRICi 20824559. VBIAgrVit37146_1977.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036007.
KOi K01971.
OMAi NRHKSGV.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci AVIT311402:GH2Y-4144-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S4 / ATCC BAA-846.

Entry informationi

Entry nameiB9K2C6_AGRVS
AccessioniPrimary (citable) accession number: B9K2C6
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: September 3, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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