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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

Avi_6007

Organism
Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4))
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciAVIT311402:GH2Y-4144-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Avi_6007Imported
OrganismiAgrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4))Imported
Taxonomic identifieri311402 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacterium
ProteomesiUP000001596 Componenti: Chromosome 2

PTM / Processingi

Proteomic databases

PRIDEiB9K2C6.

Interactioni

Protein-protein interaction databases

STRINGi311402.Avi_6007.

Structurei

3D structure databases

ProteinModelPortaliB9K2C6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiAAWAVYF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B9K2C6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMRAFATLLD RLVLTPSRNG KLKLLADYFA SVPDPDRGYA LGVLAGTLDL
60 70 80 90 100
KTVKPALLKE LVLERMDPVL FGYSYDYVGD LAETISLVWD QDRGEKAEIA
110 120 130 140 150
EPSLGEVVAL MQSLGRTQVR GAVRDLLDQL DTSGRFAFLK LATGGLRIGV
160 170 180 190 200
SARLAKQALS EMSGKDVGEI ETLWHGLEPP YESLFAWLEG GADKPVLATP
210 220 230 240 250
AIFHSVMLST PVGNGDLDGL DPADFAAEWK WDGIRVQLSR HGDTCRLYSR
260 270 280 290 300
SGDDISGAFP DIVAAANFDG VIDGELLVGG TARSNQPTRS FSDLQQRLNR
310 320 330 340 350
KSVTTKMLSD YPAFIRAYDL LFTGDQDVRN LGYEVRRGLL AEIVEKAPAT
360 370 380 390 400
RFDLSPLISF SNWDELDALR HAPPDPVIEG VMIKRRDSIY QAGRAKGPWF
410 420 430 440 450
KWKKQPLNVD AVLMYAQRGH GKRSSYYSDF TFGVWMQMPE GGSQLVPVGK
460 470 480 490 500
AYFGFTDQEL EILDKYVRNN TIDRFGPVRS IRAEPDHGFV VEVAFEGLNR
510 520 530
STRHKSGVAM RFPRISRLRS DKLPRDADRL ETLLHMLPA
Length:539
Mass (Da):59,918
Last modified:March 24, 2009 - v1
Checksum:i8A52CF8BFA034D47
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000634 Genomic DNA. Translation: ACM39024.1.

Genome annotation databases

EnsemblBacteriaiACM39024; ACM39024; Avi_6007.
KEGGiavi:Avi_6007.
PATRICi20824559. VBIAgrVit37146_1977.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000634 Genomic DNA. Translation: ACM39024.1.

3D structure databases

ProteinModelPortaliB9K2C6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi311402.Avi_6007.

Proteomic databases

PRIDEiB9K2C6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACM39024; ACM39024; Avi_6007.
KEGGiavi:Avi_6007.
PATRICi20824559. VBIAgrVit37146_1977.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiAAWAVYF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciAVIT311402:GH2Y-4144-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S4 / ATCC BAA-846Imported.

Entry informationi

Entry nameiB9K2C6_AGRVS
AccessioniPrimary (citable) accession number: B9K2C6
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: July 22, 2015
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.