B9JZI2 (GLND_AGRVS) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
[Protein-PII] uridylyltransferase
Short name=PII uridylyl-transferase
EC=2.7.7.59

Alternative name(s):
UTase
Uridylyl-removing enzyme

Gene names

Name:	glnD
Ordered Locus Names:	Avi_0424

Organism

Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4)) [Complete proteome] [HAMAP]

Taxonomic identifier

311402 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Agrobacterium › Agrobacterium vitis

Protein attributes

Sequence length	941 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein By similarity. HAMAP-Rule MF_00277
Catalytic activity	UTP + [protein-PII] = diphosphate + uridylyl-[protein-PII]. HAMAP-Rule MF_00277
Sequence similarities	Belongs to the GlnD family.

Ontologies

Keywords
Molecular function	Nucleotidyltransferase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	nitrogen fixation Inferred from electronic annotation. Source: HAMAP
Molecular_function	[protein-PII] uridylyltransferase activity Inferred from electronic annotation. Source: HAMAP amino acid binding Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: InterPro phosphoric diester hydrolase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 941	941	[Protein-PII] uridylyltransferase HAMAP-Rule MF_00277		PRO_1000132525

Sequences

	Sequence		Length	Mass (Da)
	B9JZI2 [UniParc]. Last modified March 24, 2009. Version 1. Checksum: 66E7CBB0A01D8CDB	FASTA	941	105,604
	10 20 30 40 50 60 MAKHDLSDAT LPDFKALEAE CMSIVLQNGK VPETRAAILP LLKKASIDGR EAALRHLTTN 70 80 90 100 110 120 GSGLECAGMI SNLQDNLITL VHRMVTQAVY PTTQQEFAVA AVGGYGRSTL APGSDIDLLF 130 140 150 160 170 180 LLSVKAGADA RKAVEFLLYI LWDLGFKVGH ATRLVEECIR LSRTDMTIRT AILETRFICG 190 200 210 220 230 240 EALLVGELQK RFDAEVVEKT APEFIAAKLA ERDERHRKAG DTRYLVEPNV KEGKGGLRDL 250 260 270 280 290 300 HTLFWIAKYY YRISDPADLV KLGVLSRQEW RMFQKSDDFL WAVRCHMHFA TGKPEERLSF 310 320 330 340 350 360 DLQPEIARNL GYNARPGLSE VERFMKHYFH VAKNVGDLTR IVCASLEDKQ AKAAPGLTAA 370 380 390 400 410 420 IGRFAHRPRR IPGTPEFIED RGRIALSGPD IFKRDPINIM RFFHVADLHG LEFHPDALKA 430 440 450 460 470 480 ITRCLPLIDH DFRENEEANR LFLSILTSKR DPALMLTRMN EAGVLGKFIP DFGRIVSMMQ 490 500 510 520 530 540 FNMYHHYTVD EHLIRSVGIL AEVDQGQHAD IHPLAVKLMP NIEERTVLFV AVLLHDIAKG 550 560 570 580 590 600 RQEDHSIAGA KVARRLCPRL GLNDKQTELV VWLIDQHLLM SMVAQTRDLH DRKTITDFAE 610 620 630 640 650 660 KVQSLDRLRM LLVLTVCDIR AVGPGVWNGW KGQLLRTLYY ETELLLSGGF SESPRKERAK 670 680 690 700 710 720 QAAEQLAEAL SDWSQKDQKT YTKLHYQPYL LTVPLEDQVR HAHFIRQADK ADQALATMVR 730 740 750 760 770 780 THSFHAITEI TVLAPDHPRL LSIIAGACAA AGANIADAQI FTTSDGRALD TILINREFPI 790 800 810 820 830 840 DEDEMRRANT ISKMIEDVLA GKKRLPEVIA TRTKGRKRNK TFTVKPHVTI SNSLSNKFTV 850 860 870 880 890 900 IEIECLDRIG LLAEVTAVLA DLSLDIHSAR ITTFGEKVID TFYVIDLVGQ KITNENRQGS 910 920 930 940 ISVRLKAVMS EQPDELREQM PSGIIAPAAT KSPAAEKKAR V

References

[1]

"Genome sequences of three Agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria." Slater S.C., Goldman B.S., Goodner B., Setubal J.C., Farrand S.K., Nester E.W., Burr T.J., Banta L., Dickerman A.W., Paulsen I., Otten L., Suen G., Welch R., Almeida N.F., Arnold F., Burton O.T., Du Z., Ewing A. , Godsy E., Heisel S., Houmiel K.L., Jhaveri J., Lu J., Miller N.M., Norton S., Chen Q., Phoolcharoen W., Ohlin V., Ondrusek D., Pride N., Stricklin S.L., Sun J., Wheeler C., Wilson L., Zhu H., Wood D.W. J. Bacteriol. 191:2501-2511(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: S4 / ATCC BAA-846.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000633 Genomic DNA. Translation: ACM35294.1.
RefSeq	YP_002548298.1. NC_011989.1.
3D structure databases
ProteinModelPortal	B9JZI2.
ModBase	Search...
Protein-protein interaction databases
STRING	311402.Avi_0424.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACM35294; ACM35294; Avi_0424.
GeneID	7388439.
KEGG	avi:Avi_0424.
PATRIC	20825788. VBIAgrVit37146_2575.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG2844.
HOGENOM	HOG000261779.
KO	K00990.
OMA	SPKVWNA.
ProtClustDB	PRK05092.
Enzyme and pathway databases
BioCyc	AVIT311402:GH2Y-436-MONOMER.
Family and domain databases
Gene3D	1.10.3210.10. 1 hit.
HAMAP	MF_00277. PII_uridylyl-transf.
InterPro	IPR002912. ACT_dom. IPR010043. GlnD_Uridyltrans. IPR003607. HD/PDEase_dom. IPR006674. HD_domain. IPR002934. Nucleotidyltransferase. IPR013546. PII_UdlTrfase/GS_AdlTrfase. [Graphical view]
PANTHER	PTHR13734:SF1. PTHR13734:SF1. 1 hit.
Pfam	PF01842. ACT. 2 hits. PF08335. GlnD_UR_UTase. 1 hit. PF01966. HD. 1 hit. PF01909. NTP_transf_2. 1 hit. [Graphical view]
PIRSF	PIRSF006288. PII_uridyltransf. 1 hit.
SMART	SM00471. HDc. 1 hit. [Graphical view]
TIGRFAMs	TIGR01693. UTase_glnD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

GLND_AGRVS

Accession

Primary (citable) accession number: B9JZI2

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 28, 2009
Last sequence update:	March 24, 2009
Last modified:	May 1, 2013
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program