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B9JY50 (B9JY50_AGRVS) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
D-alanine--D-alanine ligase HAMAP-Rule MF_00047

EC=6.3.2.4 HAMAP-Rule MF_00047
Alternative name(s):
D-Ala-D-Ala ligase HAMAP-Rule MF_00047
D-alanylalanine synthetase HAMAP-Rule MF_00047
Gene names
Name:ddl HAMAP-Rule MF_00047 EMBL ACM37080.1
Ordered Locus Names:Avi_2887 EMBL ACM37080.1
OrganismAgrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4)) [Complete proteome] [HAMAP] EMBL ACM37080.1
Taxonomic identifier311402 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacterium

Protein attributes

Sequence length300 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Cell wall formation By similarity. HAMAP-Rule MF_00047 SAAS SAAS005905

Catalytic activity

ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine. HAMAP-Rule MF_00047 SAAS SAAS005905

Cofactor

Binds 2 magnesium or manganese ions per subunit By similarity. HAMAP-Rule MF_00047 SAAS SAAS005905

Pathway

Cell wall biogenesis; peptidoglycan biosynthesis. HAMAP-Rule MF_00047 SAAS SAAS005905

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00047 SAAS SAAS005905.

Sequence similarities

Belongs to the D-alanine--D-alanine ligase family. HAMAP-Rule MF_00047

Contains 1 ATP-grasp domain. HAMAP-Rule MF_00047

Contains ATP-grasp domain. SAAS SAAS005905

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Domain94 – 294201ATP-grasp By similarity HAMAP-Rule MF_00047
Nucleotide binding121 – 17555ATP By similarity HAMAP-Rule MF_00047

Sites

Metal binding2441Magnesium or manganese 1 By similarity HAMAP-Rule MF_00047
Metal binding2611Magnesium or manganese 1 By similarity HAMAP-Rule MF_00047
Metal binding2611Magnesium or manganese 2 By similarity HAMAP-Rule MF_00047
Metal binding2631Magnesium or manganese 2 By similarity HAMAP-Rule MF_00047

Sequences

Sequence LengthMass (Da)Tools
B9JY50 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 1DF3822937489963

FASTA30032,385
        10         20         30         40         50         60 
MLGGFSSERP VSLASGAPCA SALEEHGYRV TRVDVTRDIA SVLHDLKPDV VFNALHGPFG 

        70         80         90        100        110        120 
EDGTIQGILE YLSIPYTHSG VLASALAMDK TQAKIVAAAA GIPVAFARQM SRFEIGNVHP 

       130        140        150        160        170        180 
IEPPYVVKPV REGSSFGVVI VKEDQSHPPQ ILGSSEWRYG DTVMVESYVA GRELTCGVMD 

       190        200        210        220        230        240 
GKALAVTEVI AKANTFYDYD SKYAAGGSTH VIPAQLSPKI YQKIQDLSVR AHNAIGCRGV 

       250        260        270        280        290        300 
SRSDFRYDDR FSEDGDLIWL EVNTQPGMTP TSLVPEMAAH AGISFGEFVS WMVEDASCSR 

« Hide

References

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000633 Genomic DNA. Translation: ACM37080.1.
RefSeqYP_002550089.1. NC_011989.1.

3D structure databases

ProteinModelPortalB9JY50.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING311402.Avi_2887.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACM37080; ACM37080; Avi_2887.
GeneID7385995.
KEGGavi:Avi_2887.
PATRIC20829770. VBIAgrVit37146_4536.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1181.
HOGENOMHOG000011592.
KOK01921.
OMAKYTEGFA.
OrthoDBEOG6ND0KB.
ProtClustDBPRK01372.

Enzyme and pathway databases

BioCycAVIT311402:GH2Y-2171-MONOMER.
UniPathwayUPA00219.

Family and domain databases

Gene3D3.30.1490.20. 1 hit.
3.30.470.20. 2 hits.
3.40.50.20. 1 hit.
HAMAPMF_00047. Dala_Dala_lig.
InterProIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR000291. D-Ala_lig_Van_CS.
IPR005905. D_ala_D_ala.
IPR011095. Dala_Dala_lig_C.
IPR011127. Dala_Dala_lig_N.
IPR016185. PreATP-grasp_dom.
[Graphical view]
PANTHERPTHR23132. PTHR23132. 1 hit.
PfamPF07478. Dala_Dala_lig_C. 1 hit.
PF01820. Dala_Dala_lig_N. 2 hits.
[Graphical view]
SUPFAMSSF52440. SSF52440. 1 hit.
TIGRFAMsTIGR01205. D_ala_D_alaTIGR. 1 hit.
PROSITEPS50975. ATP_GRASP. 1 hit.
PS00843. DALA_DALA_LIGASE_1. 1 hit.
PS00844. DALA_DALA_LIGASE_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9JY50_AGRVS
AccessionPrimary (citable) accession number: B9JY50
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: February 19, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)