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B9JXE6 (SYR_AGRVS) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Arginine--tRNA ligase

EC=6.1.1.19
Alternative name(s):
Arginyl-tRNA synthetase
Short name=ArgRS
Gene names
Name:argS
Ordered Locus Names:Avi_2675
OrganismAgrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4)) [Complete proteome] [HAMAP]
Taxonomic identifier311402 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacterium

Protein attributes

Sequence length585 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg). HAMAP-Rule MF_00123

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00123

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00123.

Sequence similarities

Belongs to the class-I aminoacyl-tRNA synthetase family.

Ontologies

Keywords
   Biological processProtein biosynthesis
   Cellular componentCytoplasm
   LigandATP-binding
Nucleotide-binding
   Molecular functionAminoacyl-tRNA synthetase
Ligase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processarginyl-tRNA aminoacylation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionATP binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

arginine-tRNA ligase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 585585Arginine--tRNA ligase HAMAP-Rule MF_00123
PRO_1000198867

Regions

Motif131 – 14111"HIGH" region HAMAP-Rule MF_00123

Sequences

Sequence LengthMass (Da)Tools
B9JXE6 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: DAA3F80F6B2ABDAA

FASTA58564,890
        10         20         30         40         50         60 
MNLFADFENR IKTALETLDL VKEKRSELSF DRIVVEPPRD ASHGDAATNA AMVLAKPLGV 

        70         80         90        100        110        120 
SPRVLADLIG EKLKEDADIA EVSVAGPGFL NIRLSVAYWQ RLLANVIAGG TDFGRSQTGA 

       130        140        150        160        170        180 
GRKVNVEYVS ANPTGPMHVG HCRGAVVGDA LANLLAFAGY GVTKEYYIND AGSQIDVLAR 

       190        200        210        220        230        240 
SVFLRYREAL GEAVGEIPAG LYPGDYLIPV GEALAQEYGV RLHNMPEEQW MEIVKDRAID 

       250        260        270        280        290        300 
AMMVMIREDL AALNVHHDLF YSERQLHANG AAAIRTAIND LTFKGHVYRG TLPPPKGQLP 

       310        320        330        340        350        360 
EDWEDREQTL FRSTEVGDDI DRPLIKSDGS YTYFAADVAY FKDKYDRGFD RMIYVLGADH 

       370        380        390        400        410        420 
GGYVKRLEAV AKAVSEGKAK LTVLLCQLVK LYRDGEPVKM SKRSGDFVTL RDVVEEVGRD 

       430        440        450        460        470        480 
SVRFMMLYRK SSEPLDFDFA KVTEQSKDNP VFYVQYAHAR CMSIFRQARE AFGDIDLSPD 

       490        500        510        520        530        540 
VLEAAVTGIT EPSEVQLIAK LAEYPRIIEA SAQSMEPHRI AFYLYDLASS FHAHWNKGKD 

       550        560        570        580 
QPELRFVNDK NRQSSLARLG LVHAVASVLQ SGLAITGTDA PQEMR 

« Hide

References

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000633 Genomic DNA. Translation: ACM36924.1.
RefSeqYP_002549932.1. NC_011989.1.

3D structure databases

ProteinModelPortalB9JXE6.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING311402.Avi_2675.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACM36924; ACM36924; Avi_2675.
GeneID7388344.
KEGGavi:Avi_2675.
PATRIC20829422. VBIAgrVit37146_4364.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0018.
HOGENOMHOG000247214.
KOK01887.
OMAMEHMGFG.
OrthoDBEOG6JB13C.

Enzyme and pathway databases

BioCycAVIT311402:GH2Y-2010-MONOMER.

Family and domain databases

Gene3D1.10.730.10. 1 hit.
3.30.1360.70. 1 hit.
3.40.50.620. 1 hit.
HAMAPMF_00123. Arg_tRNA_synth.
InterProIPR001412. aa-tRNA-synth_I_CS.
IPR001278. Arg-tRNA-ligase.
IPR005148. Arg-tRNA-synth_N.
IPR008909. DALR_anticod-bd.
IPR014729. Rossmann-like_a/b/a_fold.
IPR009080. tRNAsynth_1a_anticodon-bd.
[Graphical view]
PANTHERPTHR11956. PTHR11956. 1 hit.
PfamPF03485. Arg_tRNA_synt_N. 1 hit.
PF05746. DALR_1. 1 hit.
PF00750. tRNA-synt_1d. 1 hit.
[Graphical view]
PRINTSPR01038. TRNASYNTHARG.
SMARTSM01016. Arg_tRNA_synt_N. 1 hit.
SM00836. DALR_1. 1 hit.
[Graphical view]
SUPFAMSSF47323. SSF47323. 1 hit.
SSF55190. SSF55190. 1 hit.
TIGRFAMsTIGR00456. argS. 1 hit.
PROSITEPS00178. AA_TRNA_LIGASE_I. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameSYR_AGRVS
AccessionPrimary (citable) accession number: B9JXE6
Entry history
Integrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: March 24, 2009
Last modified: May 14, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Aminoacyl-tRNA synthetases

List of aminoacyl-tRNA synthetase entries