ID   GCSP_ALLAM              Reviewed;         954 AA.
AC   B9JWI2;
DT   28-JUL-2009, integrated into UniProtKB/Swiss-Prot.
DT   24-MAR-2009, sequence version 1.
DT   27-MAR-2024, entry version 84.
DE   RecName: Full=Glycine dehydrogenase (decarboxylating) {ECO:0000255|HAMAP-Rule:MF_00711};
DE            EC=1.4.4.2 {ECO:0000255|HAMAP-Rule:MF_00711};
DE   AltName: Full=Glycine cleavage system P-protein {ECO:0000255|HAMAP-Rule:MF_00711};
DE   AltName: Full=Glycine decarboxylase {ECO:0000255|HAMAP-Rule:MF_00711};
DE   AltName: Full=Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000255|HAMAP-Rule:MF_00711};
GN   Name=gcvP {ECO:0000255|HAMAP-Rule:MF_00711};
GN   OrderedLocusNames=Avi_2252;
OS   Allorhizobium ampelinum (strain ATCC BAA-846 / DSM 112012 / S4)
OS   (Agrobacterium vitis (strain S4)).
OC   Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC   Rhizobiaceae; Rhizobium/Agrobacterium group; Allorhizobium;
OC   Allorhizobium ampelinum.
OX   NCBI_TaxID=311402;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC BAA-846 / DSM 112012 / S4;
RX   PubMed=19251847; DOI=10.1128/jb.01779-08;
RA   Slater S.C., Goldman B.S., Goodner B., Setubal J.C., Farrand S.K.,
RA   Nester E.W., Burr T.J., Banta L., Dickerman A.W., Paulsen I., Otten L.,
RA   Suen G., Welch R., Almeida N.F., Arnold F., Burton O.T., Du Z., Ewing A.,
RA   Godsy E., Heisel S., Houmiel K.L., Jhaveri J., Lu J., Miller N.M.,
RA   Norton S., Chen Q., Phoolcharoen W., Ohlin V., Ondrusek D., Pride N.,
RA   Stricklin S.L., Sun J., Wheeler C., Wilson L., Zhu H., Wood D.W.;
RT   "Genome sequences of three Agrobacterium biovars help elucidate the
RT   evolution of multichromosome genomes in bacteria.";
RL   J. Bacteriol. 191:2501-2511(2009).
CC   -!- FUNCTION: The glycine cleavage system catalyzes the degradation of
CC       glycine. The P protein binds the alpha-amino group of glycine through
CC       its pyridoxal phosphate cofactor; CO(2) is released and the remaining
CC       methylamine moiety is then transferred to the lipoamide cofactor of the
CC       H protein. {ECO:0000255|HAMAP-Rule:MF_00711}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=glycine + H(+) + N(6)-[(R)-lipoyl]-L-lysyl-[glycine-cleavage
CC         complex H protein] = CO2 + N(6)-[(R)-S(8)-aminomethyldihydrolipoyl]-
CC         L-lysyl-[glycine-cleavage complex H protein]; Xref=Rhea:RHEA:24304,
CC         Rhea:RHEA-COMP:10494, Rhea:RHEA-COMP:10495, ChEBI:CHEBI:15378,
CC         ChEBI:CHEBI:16526, ChEBI:CHEBI:57305, ChEBI:CHEBI:83099,
CC         ChEBI:CHEBI:83143; EC=1.4.4.2; Evidence={ECO:0000255|HAMAP-
CC         Rule:MF_00711};
CC   -!- COFACTOR:
CC       Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326;
CC         Evidence={ECO:0000255|HAMAP-Rule:MF_00711};
CC   -!- SUBUNIT: The glycine cleavage system is composed of four proteins: P,
CC       T, L and H. {ECO:0000255|HAMAP-Rule:MF_00711}.
CC   -!- SIMILARITY: Belongs to the GcvP family. {ECO:0000255|HAMAP-
CC       Rule:MF_00711}.
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DR   EMBL; CP000633; ACM36610.1; -; Genomic_DNA.
DR   RefSeq; WP_015916031.1; NC_011989.1.
DR   AlphaFoldDB; B9JWI2; -.
DR   SMR; B9JWI2; -.
DR   STRING; 311402.Avi_2252; -.
DR   KEGG; avi:Avi_2252; -.
DR   eggNOG; COG0403; Bacteria.
DR   eggNOG; COG1003; Bacteria.
DR   HOGENOM; CLU_004620_4_0_5; -.
DR   Proteomes; UP000001596; Chromosome 1.
DR   GO; GO:0004375; F:glycine dehydrogenase (decarboxylating) activity; IEA:UniProtKB-EC.
DR   GO; GO:0019464; P:glycine decarboxylation via glycine cleavage system; IEA:UniProtKB-UniRule.
DR   CDD; cd00613; GDC-P; 2.
DR   Gene3D; 3.90.1150.10; Aspartate Aminotransferase, domain 1; 2.
DR   Gene3D; 3.40.640.10; Type I PLP-dependent aspartate aminotransferase-like (Major domain); 2.
DR   HAMAP; MF_00711; GcvP; 1.
DR   InterPro; IPR003437; GcvP.
DR   InterPro; IPR049316; GDC-P_C.
DR   InterPro; IPR049315; GDC-P_N.
DR   InterPro; IPR020581; GDC_P.
DR   InterPro; IPR015424; PyrdxlP-dep_Trfase.
DR   InterPro; IPR015421; PyrdxlP-dep_Trfase_major.
DR   InterPro; IPR015422; PyrdxlP-dep_Trfase_small.
DR   NCBIfam; TIGR00461; gcvP; 1.
DR   PANTHER; PTHR11773:SF1; GLYCINE DEHYDROGENASE (DECARBOXYLATING), MITOCHONDRIAL; 1.
DR   PANTHER; PTHR11773; GLYCINE DEHYDROGENASE, DECARBOXYLATING; 1.
DR   Pfam; PF21478; GcvP2_C; 1.
DR   Pfam; PF02347; GDC-P; 2.
DR   SUPFAM; SSF53383; PLP-dependent transferases; 2.
PE   3: Inferred from homology;
KW   Oxidoreductase; Pyridoxal phosphate; Reference proteome.
FT   CHAIN           1..954
FT                   /note="Glycine dehydrogenase (decarboxylating)"
FT                   /id="PRO_1000147961"
FT   MOD_RES         704
FT                   /note="N6-(pyridoxal phosphate)lysine"
FT                   /evidence="ECO:0000255|HAMAP-Rule:MF_00711"
SQ   SEQUENCE   954 AA;  103381 MW;  956197CAE86B42D8 CRC64;
     MTTPTEFQFT DYQPYDFANR RHIGPSPAEM DEMLKTVGYD SLDGLIAATV PASIRQSAPL
     VWGKAMSERE ALDKLRETAN KNKALTSLIG QGYYGTITPP VIQRNILENP AWYTAYTPYQ
     PEISQGRLEA LLNFQTMICD LTGLDVANAS LLDEATAAAE AMAMAERVAK SKAKAFFVDS
     NCHPQTIAVI QTRAEPLGWG VVVGNPFTDL NPGEVFGALF QYPGTHGHVS DFTPLINALH
     NAQAIAAVAA DPLALLLLKS PGEMGADIAI GSSQRFGVPV GYGGPHAAYM AVKDAIKRSM
     PGRLVGVSVD SRGNRAYRLS LQTREQHIRR EKATSNICTA QVLLAVMASM YAVFHGPQGL
     KAIAQQVHQK TVLLAKGLEK LGFTIEPETF FDTITLEVGH MQGLILRAAV AEGVNLRKVG
     TTKIGISLDE RTRPATLEAV WRAFGGNFAV GDFTPDYRLP TSLLRTSQYL THPIFHMNRA
     ESEMTRYIRR LSDRDLALDR AMIPLGSCTM KLNATAEMLP ITWPEFSDIH PFAPADQALG
     YQEMIDDLSE KLCAVTGYDA ISMQPNSGAQ GEYAGLLTIR NYHLAKGDTH RTVCLIPTSA
     HGTNPASAQM AGMLVVPVKA LDNGDVDLAD FRTKAEQHST NLSCCMITYP STHGVFEETV
     REICEITHAH GGQVYLDGAN MNAMVGIARP GDIGSDVSHL NLHKTFCIPH GGGGPGMGPI
     GVKAHLTPYL PGHVETDGRP GAVSAAPYGS PSILPISWSY CLMMGGEGLT QATKVAILNA
     NYIAARLTGA YDVLYTSASG RVAHECIIDT RPLADSAGVT VDDVAKRLID CGFHAPTMSW
     PVAGTLMIEP TESETKAELD RFCTAMLAIR EEARAIEDGR MDKTNNPLKN APHTVEDLVG
     EWDRPYSRDQ ACYPPGAFRV DKYWSSVNRV DNVYGDRNLV CTCPPMSEYA EAAE
//