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B9JSL3

- EX7S_AGRVS

UniProt

B9JSL3 - EX7S_AGRVS

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Protein

Exodeoxyribonuclease 7 small subunit

Gene

xseB

Organism
Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4))
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides.UniRule annotation

Catalytic activityi

Exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield nucleoside 5'-phosphates.UniRule annotation

GO - Molecular functioni

  1. exodeoxyribonuclease VII activity Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Exonuclease, Hydrolase, Nuclease

Enzyme and pathway databases

BioCyciAVIT311402:GH2Y-765-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Exodeoxyribonuclease 7 small subunitUniRule annotation (EC:3.1.11.6UniRule annotation)
Alternative name(s):
Exodeoxyribonuclease VII small subunitUniRule annotation
Short name:
Exonuclease VII small subunitUniRule annotation
Gene namesi
Name:xseBUniRule annotation
Ordered Locus Names:Avi_0998
OrganismiAgrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4))
Taxonomic identifieri311402 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacterium
ProteomesiUP000001596: Chromosome 1

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-HAMAP
  2. exodeoxyribonuclease VII complex Source: InterPro
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 8383Exodeoxyribonuclease 7 small subunitPRO_1000200240Add
BLAST

Interactioni

Subunit structurei

Heterooligomer composed of large and small subunits.UniRule annotation

Protein-protein interaction databases

STRINGi311402.Avi_0998.

Family & Domainsi

Sequence similaritiesi

Belongs to the XseB family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1722.
HOGENOMiHOG000228798.
KOiK03602.
OMAiMTENANT.
OrthoDBiEOG69KV31.

Family and domain databases

Gene3Di1.10.287.1040. 1 hit.
HAMAPiMF_00337. Exonuc_7_S.
InterProiIPR003761. Exonuc_VII_S.
[Graphical view]
PfamiPF02609. Exonuc_VII_S. 1 hit.
[Graphical view]
PIRSFiPIRSF006488. Exonuc_VII_S. 1 hit.
ProDomiPD028235. Exonuc_VII_S. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR01280. xseB. 1 hit.

Sequencei

Sequence statusi: Complete.

B9JSL3 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTDVAATDIA AYSFEKAVAE LESIVARLER GDVALDESIS IYERGELLKK
60 70 80
HCEALLSAAE NRIEKIRLDR AGKPVGAEPL DKD
Length:83
Mass (Da):9,086
Last modified:March 24, 2009 - v1
Checksum:iD3EBCD13503D1B3C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000633 Genomic DNA. Translation: ACM35706.1.
RefSeqiWP_015915130.1. NC_011989.1.
YP_002548712.1. NC_011989.1.

Genome annotation databases

EnsemblBacteriaiACM35706; ACM35706; Avi_0998.
GeneIDi7387096.
KEGGiavi:Avi_0998.
PATRICi20826712. VBIAgrVit37146_3030.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000633 Genomic DNA. Translation: ACM35706.1 .
RefSeqi WP_015915130.1. NC_011989.1.
YP_002548712.1. NC_011989.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 311402.Avi_0998.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACM35706 ; ACM35706 ; Avi_0998 .
GeneIDi 7387096.
KEGGi avi:Avi_0998.
PATRICi 20826712. VBIAgrVit37146_3030.

Phylogenomic databases

eggNOGi COG1722.
HOGENOMi HOG000228798.
KOi K03602.
OMAi MTENANT.
OrthoDBi EOG69KV31.

Enzyme and pathway databases

BioCyci AVIT311402:GH2Y-765-MONOMER.

Family and domain databases

Gene3Di 1.10.287.1040. 1 hit.
HAMAPi MF_00337. Exonuc_7_S.
InterProi IPR003761. Exonuc_VII_S.
[Graphical view ]
Pfami PF02609. Exonuc_VII_S. 1 hit.
[Graphical view ]
PIRSFi PIRSF006488. Exonuc_VII_S. 1 hit.
ProDomi PD028235. Exonuc_VII_S. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
TIGRFAMsi TIGR01280. xseB. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S4 / ATCC BAA-846.

Entry informationi

Entry nameiEX7S_AGRVS
AccessioniPrimary (citable) accession number: B9JSL3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: March 24, 2009
Last modified: October 29, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3