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B9JSL3

- EX7S_AGRVS

UniProt

B9JSL3 - EX7S_AGRVS

Protein

Exodeoxyribonuclease 7 small subunit

Gene

xseB

Organism
Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4))
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides.UniRule annotation

    Catalytic activityi

    Exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield nucleoside 5'-phosphates.UniRule annotation

    GO - Molecular functioni

    1. exodeoxyribonuclease VII activity Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Exonuclease, Hydrolase, Nuclease

    Enzyme and pathway databases

    BioCyciAVIT311402:GH2Y-765-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Exodeoxyribonuclease 7 small subunitUniRule annotation (EC:3.1.11.6UniRule annotation)
    Alternative name(s):
    Exodeoxyribonuclease VII small subunitUniRule annotation
    Short name:
    Exonuclease VII small subunitUniRule annotation
    Gene namesi
    Name:xseBUniRule annotation
    Ordered Locus Names:Avi_0998
    OrganismiAgrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4))
    Taxonomic identifieri311402 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacterium
    ProteomesiUP000001596: Chromosome 1

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell
    2. exodeoxyribonuclease VII complex Source: InterPro

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 8383Exodeoxyribonuclease 7 small subunitPRO_1000200240Add
    BLAST

    Interactioni

    Subunit structurei

    Heterooligomer composed of large and small subunits.UniRule annotation

    Protein-protein interaction databases

    STRINGi311402.Avi_0998.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the XseB family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1722.
    HOGENOMiHOG000228798.
    KOiK03602.
    OMAiMTENANT.
    OrthoDBiEOG69KV31.

    Family and domain databases

    Gene3Di1.10.287.1040. 1 hit.
    HAMAPiMF_00337. Exonuc_7_S.
    InterProiIPR003761. Exonuc_VII_S.
    [Graphical view]
    PfamiPF02609. Exonuc_VII_S. 1 hit.
    [Graphical view]
    PIRSFiPIRSF006488. Exonuc_VII_S. 1 hit.
    ProDomiPD028235. Exonuc_VII_S. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    TIGRFAMsiTIGR01280. xseB. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    B9JSL3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTDVAATDIA AYSFEKAVAE LESIVARLER GDVALDESIS IYERGELLKK   50
    HCEALLSAAE NRIEKIRLDR AGKPVGAEPL DKD 83
    Length:83
    Mass (Da):9,086
    Last modified:March 24, 2009 - v1
    Checksum:iD3EBCD13503D1B3C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000633 Genomic DNA. Translation: ACM35706.1.
    RefSeqiYP_002548712.1. NC_011989.1.

    Genome annotation databases

    EnsemblBacteriaiACM35706; ACM35706; Avi_0998.
    GeneIDi7387096.
    KEGGiavi:Avi_0998.
    PATRICi20826712. VBIAgrVit37146_3030.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000633 Genomic DNA. Translation: ACM35706.1 .
    RefSeqi YP_002548712.1. NC_011989.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 311402.Avi_0998.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACM35706 ; ACM35706 ; Avi_0998 .
    GeneIDi 7387096.
    KEGGi avi:Avi_0998.
    PATRICi 20826712. VBIAgrVit37146_3030.

    Phylogenomic databases

    eggNOGi COG1722.
    HOGENOMi HOG000228798.
    KOi K03602.
    OMAi MTENANT.
    OrthoDBi EOG69KV31.

    Enzyme and pathway databases

    BioCyci AVIT311402:GH2Y-765-MONOMER.

    Family and domain databases

    Gene3Di 1.10.287.1040. 1 hit.
    HAMAPi MF_00337. Exonuc_7_S.
    InterProi IPR003761. Exonuc_VII_S.
    [Graphical view ]
    Pfami PF02609. Exonuc_VII_S. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF006488. Exonuc_VII_S. 1 hit.
    ProDomi PD028235. Exonuc_VII_S. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    TIGRFAMsi TIGR01280. xseB. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: S4 / ATCC BAA-846.

    Entry informationi

    Entry nameiEX7S_AGRVS
    AccessioniPrimary (citable) accession number: B9JSL3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 28, 2009
    Last sequence update: March 24, 2009
    Last modified: October 1, 2014
    This is version 37 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3