B9JSL3 (EX7S_AGRVS) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Exodeoxyribonuclease 7 small subunit
EC=3.1.11.6

Alternative name(s):
Exodeoxyribonuclease VII small subunit
Short name=Exonuclease VII small subunit

Gene names

Name:	xseB
Ordered Locus Names:	Avi_0998

Organism

Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4)) [Complete proteome] [HAMAP]

Taxonomic identifier

311402 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Agrobacterium › Agrobacterium vitis

Protein attributes

Sequence length	83 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides By similarity. HAMAP-Rule MF_00337
Catalytic activity	Exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield nucleoside 5'-phosphates. HAMAP-Rule MF_00337
Subunit structure	Heterooligomer composed of large and small subunits By similarity.
Subcellular location	Cytoplasm By similarity.
Sequence similarities	Belongs to the XseB family.

Ontologies

Keywords
Cellular component	Cytoplasm
Molecular function	Exonuclease Hydrolase Nuclease
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA catabolic process Inferred from electronic annotation. Source: HAMAP nucleic acid phosphodiester bond hydrolysis Inferred from electronic annotation. Source: GOC
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell exodeoxyribonuclease VII complex Inferred from electronic annotation. Source: InterPro
Molecular_function	exodeoxyribonuclease VII activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 83	83	Exodeoxyribonuclease 7 small subunit HAMAP-Rule MF_00337		PRO_1000200240

Sequences

	Sequence		Length	Mass (Da)
	B9JSL3 [UniParc]. Last modified March 24, 2009. Version 1. Checksum: D3EBCD13503D1B3C	FASTA	83	9,086
	10 20 30 40 50 60 MTDVAATDIA AYSFEKAVAE LESIVARLER GDVALDESIS IYERGELLKK HCEALLSAAE 70 80 NRIEKIRLDR AGKPVGAEPL DKD

References

[1]

"Genome sequences of three Agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria." Slater S.C., Goldman B.S., Goodner B., Setubal J.C., Farrand S.K., Nester E.W., Burr T.J., Banta L., Dickerman A.W., Paulsen I., Otten L., Suen G., Welch R., Almeida N.F., Arnold F., Burton O.T., Du Z., Ewing A. , Godsy E., Heisel S., Houmiel K.L., Jhaveri J., Lu J., Miller N.M., Norton S., Chen Q., Phoolcharoen W., Ohlin V., Ondrusek D., Pride N., Stricklin S.L., Sun J., Wheeler C., Wilson L., Zhu H., Wood D.W. J. Bacteriol. 191:2501-2511(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: S4 / ATCC BAA-846.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000633 Genomic DNA. Translation: ACM35706.1.
RefSeq	YP_002548712.1. NC_011989.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	311402.Avi_0998.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACM35706; ACM35706; Avi_0998.
GeneID	7387096.
KEGG	avi:Avi_0998.
PATRIC	20826712. VBIAgrVit37146_3030.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1722.
HOGENOM	HOG000228798.
KO	K03602.
OMA	SISIYER.
ProtClustDB	PRK00977.
Enzyme and pathway databases
BioCyc	AVIT311402:GH2Y-853-MONOMER.
Family and domain databases
Gene3D	1.10.287.1040. 1 hit.
HAMAP	MF_00337. Exonuc_7_S.
InterPro	IPR003761. Exonuc_VII_S. [Graphical view]
Pfam	PF02609. Exonuc_VII_S. 1 hit. [Graphical view]
PIRSF	PIRSF006488. Exonuc_VII_S. 1 hit.
ProDom	PD028235. Exonuc_VII_S. 1 hit. [Graphical view] [Entries sharing at least one domain]
SUPFAM	SSF116842. SSF116842. 1 hit.
TIGRFAMs	TIGR01280. xseB. 1 hit.
ProtoNet	Search...

Entry information

Entry name

EX7S_AGRVS

Accession

Primary (citable) accession number: B9JSL3

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 28, 2009
Last sequence update:	March 24, 2009
Last modified:	May 1, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program