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B9JFF5 (B9JFF5_AGRRK) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA topoisomerase IV, B subunit EMBL ACM26645.1
Gene names
Name:parE EMBL ACM26645.1
Ordered Locus Names:Arad_2462
OrganismAgrobacterium radiobacter (strain K84 / ATCC BAA-868) [Complete proteome] [HAMAP]
Taxonomic identifier311403 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Agrobacterium

Protein attributes

Sequence length689 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the type II topoisomerase family. RuleBase RU000380

Sequences

Sequence LengthMass (Da)Tools
B9JFF5 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: A5F1E93FA7371CB1

FASTA68976,011
        10         20         30         40         50         60 
MDNSNDLFSG LPVSPKPETA EKPAPKAESP VAAPAPAPRA APTTSSAEEY GANSIRVLEG 

        70         80         90        100        110        120 
LEPVRMRPGM YIGGTDEKAL HHLFAEVIDN SMDEAVAGHA DFIEVHLDQR GYLTVTDNGR 

       130        140        150        160        170        180 
GIPVENHPQV PGKSTLEVIM TKLHAGGKFD GKAYETSGGL HGVGVSVVNA LSDDLEVEVA 

       190        200        210        220        230        240 
RNRKLYRQRF SRGVPQGGLE ELGDVHNRRG TRVRFHPDPQ IFGDHAKFDP ARVFRMARSK 

       250        260        270        280        290        300 
AYLFGGVEIR WSCDPELAPA GSDVPDKAVF HFPGGLKDYL KATMGNEFTV TREIFAGKSE 

       310        320        330        340        350        360 
KGTGHGSLEW AITWYGGDPQ VHSYCNTIPT PEGGTHEAGL RIALTKGLKN YAELTQNKRA 

       370        380        390        400        410        420 
AGITTDDVMI SGVGMLSIFI REPEFVGQTK DRLATVEAQR IVENALRDPF DHYLTDNPTE 

       430        440        450        460        470        480 
AEKLLEWVIE RSEERLRRRK EKEVNRKTAV RKLRLPGKLA DCSQNTAEGA ELFLVEGDSA 

       490        500        510        520        530        540 
GGSAKQARNR MNQAILPLRG KILNVASAGR EKLSANQQIA DLVQALGCGT RSKYREEDLR 

       550        560        570        580        590        600 
YQRIVVMTDA DVDGAHIASL LITFFYQEMP ELVRGGHLFL AVPPLYKITQ GSKSIYARDD 

       610        620        630        640        650        660 
AHRLELMESD FKGKGKIEIS RFKGLGEMLP AQLKETTMDP SKRTLLRVVI DEVDFEGTRD 

       670        680 
AVDNLMGTKP EARFRFIQER AAFAENLDI

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000628 Genomic DNA. Translation: ACM26645.1.
RefSeqYP_002544573.1. NC_011985.1.

3D structure databases

ProteinModelPortalB9JFF5.
ModBaseSearch...

Protein-protein interaction databases

STRINGB9JFF5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7372075.
GenomeReviewsGene locus Arad_2462 in contig CP000628_GR.
KEGGara:Arad_2462.
PATRIC20804608. VBIAgrRad129173_4388.

Organism-specific databases

CMRSearch...

Phylogenomic databases

OMAQARDKEF.
ProtClustDBPRK05559.

Family and domain databases

InterProIPR003594. ATPase-like_ATP-bd.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR001241. Topo_IIA.
IPR013759. Topo_IIA_B/N_ab.
IPR002288. Topo_IIA_B_C.
IPR013506. Topo_IIA_bsu_dom2.
IPR013760. Topo_IIA_cen.
IPR018522. TopoIIA_CS.
IPR005737. TopoIV_B_Gneg.
[Graphical view]
Gene3DG3DSA:3.30.565.10. ATP_bd_ATPase. 1 hit.
G3DSA:3.30.230.10. Ribosomal_S5_D2-type_fold. 1 hit.
G3DSA:3.40.50.670. Topo_IIA_B/N_ab. 1 hit.
KOK02622.
PfamPF00204. DNA_gyraseB. 1 hit.
PF00986. DNA_gyraseB_C. 1 hit.
PF02518. HATPase_c. 1 hit.
[Graphical view]
PRINTSPR00418. TPI2FAMILY.
SMARTSM00387. HATPase_c. 1 hit.
SM00433. TOP2c. 1 hit.
[Graphical view]
SUPFAMSSF55874. ATP_bd_ATPase. 1 hit.
SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
SSF56719. Topo_IIA_cen. 1 hit.
TIGRFAMsTIGR01055. ParE_Gneg. 1 hit.
PROSITEPS00177. TOPOISOMERASE_II. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9JFF5_AGRRK
AccessionPrimary (citable) accession number: B9JFF5
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: January 25, 2012
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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