B9JCB1 (B9JCB1_AGRRK) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alanine racemase EMBL ACM26032.1

Gene names

Name:	alr EMBL ACM26032.1
Ordered Locus Names:	Arad_1645 EMBL ACM26032.1

Organism

Agrobacterium radiobacter (strain K84 / ATCC BAA-868) [Complete proteome] [HAMAP] EMBL ACM26032.1

Taxonomic identifier

311403 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Agrobacterium › Agrobacterium tumefaciens complex › Rhizobium radiobacter

Protein attributes

Sequence length	387 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622
Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS020622
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate SAAS SAAS020622 RuleBase RU000608
Molecular function	Isomerase RuleBase RU000608 SAAS SAAS020622
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B9JCB1 [UniParc]. Last modified March 24, 2009. Version 1. Checksum: 5EA5DDAB15BF248B	FASTA	387	41,731
	10 20 30 40 50 60 MTDSFDDNDA FAAAGLRLTV DLDALVENWR DMAHRSGRAR TSAVVKADAY GLGIEDVGEA 70 80 90 100 110 120 LYLAGARDFF VATADEGATL RLYAPDARIF VLSGIWPGME RVFFENDLVP VIASEEQLTF 130 140 150 160 170 180 WMSVLSDYGD YPCALQVDTG FNRLGLPMED ALALADDVSR PASFAPVLVM SHLACGDDPA 190 200 210 220 230 240 NPMNRQQLEA FRKVSAAFEG IEASLANSAG IFLGPEYHFD LTRPGIATYG GEAVPGIANP 250 260 270 280 290 300 MRPVATAEAR IIQTRFVKAG ETVGYGRAMQ LTRDSRLAIV SAGYADGYMR GQSSGGVPLR 310 320 330 340 350 360 QTDLPGGHGF IAGHRVPVAG RITMDLTIFD ITDLPDNLVR AGDYVELFGS NILVDDAARA 370 380 AGTIGYEMLT SLGLRHERRY VSEEAEE

References

[1]

"Genome sequences of three agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria." Slater S.C., Goldman B.S., Goodner B., Setubal J.C., Farrand S.K., Nester E.W., Burr T.J., Banta L., Dickerman A.W., Paulsen I., Otten L., Suen G., Welch R., Almeida N.F., Arnold F., Burton O.T., Du Z., Ewing A. , Godsy E., Heisel S., Houmiel K.L., Jhaveri J., Lu J., Miller N.M., Norton S., Chen Q., Phoolcharoen W., Ohlin V., Ondrusek D., Pride N., Stricklin S.L., Sun J., Wheeler C., Wilson L., Zhu H., Wood D.W. J. Bacteriol. 191:2501-2511(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K84 / ATCC BAA-868.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000628 Genomic DNA. Translation: ACM26032.1.
RefSeq	YP_002543958.1. NC_011985.1.
3D structure databases
ProteinModelPortal	B9JCB1.
ModBase	Search...
Protein-protein interaction databases
STRING	311403.Arad_1645.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACM26032; ACM26032; Arad_1645.
GeneID	7370857.
KEGG	ara:Arad_1645.
PATRIC	20803286. VBIAgrRad129173_3747.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0787.
HOGENOM	HOG000031445.
KO	K01775.
OMA	GDYIELF.
ProtClustDB	CLSK800293.
Enzyme and pathway databases
BioCyc	ARAD311403:GHU8-1824-MONOMER.
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B9JCB1_AGRRK

Accession

Primary (citable) accession number: B9JCB1

Entry history

Integrated into UniProtKB/TrEMBL:	March 24, 2009
Last sequence update:	March 24, 2009
Last modified:	May 1, 2013
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)