B9JBC9 (B9JBC9_AGRRK) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase (ATP) protein EMBL ACM25835.1

Gene names

Ordered Locus Names:

Arad_1382 EMBL ACM25835.1

Organism

Agrobacterium radiobacter (strain K84 / ATCC BAA-868) [Complete proteome] [HAMAP] EMBL ACM25835.1

Taxonomic identifier

311403 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Agrobacterium › Agrobacterium tumefaciens complex › Rhizobium radiobacter

Protein attributes

Sequence length	545 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACM25835.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B9JBC9 [UniParc]. Last modified March 24, 2009. Version 1. Checksum: EC82447D6F11914A	FASTA	545	61,485
	10 20 30 40 50 60 MKAFADLLDR LVLTPSRNGK LKLLTDYFRD TPDPDRGYGL AAIAGTLEVR NVKPAMLREL 70 80 90 100 110 120 VLERMDEVLF RYSYDYVGDL AETISLVWDK ESDIVRPPGE QPRLGEVVRR MNALGRTEVR 130 140 150 160 170 180 GFVRDLLDRL DTSGRFAFLK LATGALRIGV SARLAKQALA ELSGKDVTEI ETLWHGLQPP 190 200 210 220 230 240 YESLFHWLEG KGERPVLATP AIFHSVMLAN PVEPGDLDGL DPKDFAAEWK WDGIRVQLSR 250 260 270 280 290 300 AGATAKLYSR SGDDISGAFP DIVDAISFEG VVDGELLIGG TVRSNSPTRT FSDLQQRLNR 310 320 330 340 350 360 KSVTAKMLED YPAFIRAYDL LFDGEEDVRA RGFLDRRERL TEIVEAAPHD RFDLSPLVDF 370 380 390 400 410 420 TSWEELDQLR SSPPDPVIEG VMIKRRDSAY LAGRAKGPWF KWKRNPYNVD AVLMYAQRGH 430 440 450 460 470 480 GKRSSYYSDF TFGVWSMTPE GEQLVPVGKA YFGFTDAELE VLDKFVRNNT IDRFGPVRAV 490 500 510 520 530 540 RADRDFGFVL EVAFEGINRS MRHKSGVAMR FPRISRLRPE KPPYEADRLE TLVALIDAKA PAVDE

References

[1]

"Genome sequences of three agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria." Slater S.C., Goldman B.S., Goodner B., Setubal J.C., Farrand S.K., Nester E.W., Burr T.J., Banta L., Dickerman A.W., Paulsen I., Otten L., Suen G., Welch R., Almeida N.F., Arnold F., Burton O.T., Du Z., Ewing A. , Godsy E., Heisel S., Houmiel K.L., Jhaveri J., Lu J., Miller N.M., Norton S., Chen Q., Phoolcharoen W., Ohlin V., Ondrusek D., Pride N., Stricklin S.L., Sun J., Wheeler C., Wilson L., Zhu H., Wood D.W. J. Bacteriol. 191:2501-2511(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K84 / ATCC BAA-868.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000628 Genomic DNA. Translation: ACM25835.1.
RefSeq	YP_002543761.1. NC_011985.1.
3D structure databases
ProteinModelPortal	B9JBC9.
ModBase	Search...
Protein-protein interaction databases
STRING	311403.Arad_1382.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACM25835; ACM25835; Arad_1382.
GeneID	7370169.
KEGG	ara:Arad_1382.
PATRIC	20802872. VBIAgrRad129173_3541.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	PRK09247.
Enzyme and pathway databases
BioCyc	ARAD311403:GHU8-1627-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B9JBC9_AGRRK

Accession

Primary (citable) accession number: B9JBC9

Entry history

Integrated into UniProtKB/TrEMBL:	March 24, 2009
Last sequence update:	March 24, 2009
Last modified:	May 1, 2013
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)