Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

B9JBC9

- B9JBC9_AGRRK

UniProt

B9JBC9 - B9JBC9_AGRRK

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

DNA ligase (ATP) protein

Gene

Arad_1382

Organism
Agrobacterium radiobacter (strain K84 / ATCC BAA-868)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciARAD311403:GHU8-1069-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase (ATP) proteinImported
Gene namesi
Ordered Locus Names:Arad_1382Imported
OrganismiAgrobacterium radiobacter (strain K84 / ATCC BAA-868)Imported
Taxonomic identifieri311403 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacteriumAgrobacterium tumefaciens complex
ProteomesiUP000001600: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi311403.Arad_1382.

Structurei

3D structure databases

ProteinModelPortaliB9JBC9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiNRHKSGV.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B9JBC9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKAFADLLDR LVLTPSRNGK LKLLTDYFRD TPDPDRGYGL AAIAGTLEVR
60 70 80 90 100
NVKPAMLREL VLERMDEVLF RYSYDYVGDL AETISLVWDK ESDIVRPPGE
110 120 130 140 150
QPRLGEVVRR MNALGRTEVR GFVRDLLDRL DTSGRFAFLK LATGALRIGV
160 170 180 190 200
SARLAKQALA ELSGKDVTEI ETLWHGLQPP YESLFHWLEG KGERPVLATP
210 220 230 240 250
AIFHSVMLAN PVEPGDLDGL DPKDFAAEWK WDGIRVQLSR AGATAKLYSR
260 270 280 290 300
SGDDISGAFP DIVDAISFEG VVDGELLIGG TVRSNSPTRT FSDLQQRLNR
310 320 330 340 350
KSVTAKMLED YPAFIRAYDL LFDGEEDVRA RGFLDRRERL TEIVEAAPHD
360 370 380 390 400
RFDLSPLVDF TSWEELDQLR SSPPDPVIEG VMIKRRDSAY LAGRAKGPWF
410 420 430 440 450
KWKRNPYNVD AVLMYAQRGH GKRSSYYSDF TFGVWSMTPE GEQLVPVGKA
460 470 480 490 500
YFGFTDAELE VLDKFVRNNT IDRFGPVRAV RADRDFGFVL EVAFEGINRS
510 520 530 540
MRHKSGVAMR FPRISRLRPE KPPYEADRLE TLVALIDAKA PAVDE
Length:545
Mass (Da):61,485
Last modified:March 24, 2009 - v1
Checksum:iEC82447D6F11914A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000628 Genomic DNA. Translation: ACM25835.1.
RefSeqiWP_012651111.1. NC_011985.1.
YP_002543761.1. NC_011985.1.

Genome annotation databases

EnsemblBacteriaiACM25835; ACM25835; Arad_1382.
GeneIDi7370169.
KEGGiara:Arad_1382.
PATRICi20802872. VBIAgrRad129173_3541.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000628 Genomic DNA. Translation: ACM25835.1 .
RefSeqi WP_012651111.1. NC_011985.1.
YP_002543761.1. NC_011985.1.

3D structure databases

ProteinModelPortali B9JBC9.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 311403.Arad_1382.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACM25835 ; ACM25835 ; Arad_1382 .
GeneIDi 7370169.
KEGGi ara:Arad_1382.
PATRICi 20802872. VBIAgrRad129173_3541.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036007.
KOi K01971.
OMAi NRHKSGV.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci ARAD311403:GHU8-1069-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K84 / ATCC BAA-868Imported.

Entry informationi

Entry nameiB9JBC9_AGRRK
AccessioniPrimary (citable) accession number: B9JBC9
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: October 1, 2014
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3