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B9JBC9

- B9JBC9_AGRRK

UniProt

B9JBC9 - B9JBC9_AGRRK

Protein
Submitted name:

DNA ligase (ATP) protein

Gene

Arad_1382

Organism
Agrobacterium radiobacter (strain K84 / ATCC BAA-868)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 41 (01 Oct 2014)
      Sequence version 1 (24 Mar 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciARAD311403:GHU8-1069-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase (ATP) proteinImported
    Gene namesi
    Ordered Locus Names:Arad_1382Imported
    OrganismiAgrobacterium radiobacter (strain K84 / ATCC BAA-868)Imported
    Taxonomic identifieri311403 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacteriumAgrobacterium tumefaciens complex
    ProteomesiUP000001600: Chromosome 1

    Interactioni

    Protein-protein interaction databases

    STRINGi311403.Arad_1382.

    Structurei

    3D structure databases

    ProteinModelPortaliB9JBC9.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiNRHKSGV.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B9JBC9-1 [UniParc]FASTAAdd to Basket

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    MKAFADLLDR LVLTPSRNGK LKLLTDYFRD TPDPDRGYGL AAIAGTLEVR    50
    NVKPAMLREL VLERMDEVLF RYSYDYVGDL AETISLVWDK ESDIVRPPGE 100
    QPRLGEVVRR MNALGRTEVR GFVRDLLDRL DTSGRFAFLK LATGALRIGV 150
    SARLAKQALA ELSGKDVTEI ETLWHGLQPP YESLFHWLEG KGERPVLATP 200
    AIFHSVMLAN PVEPGDLDGL DPKDFAAEWK WDGIRVQLSR AGATAKLYSR 250
    SGDDISGAFP DIVDAISFEG VVDGELLIGG TVRSNSPTRT FSDLQQRLNR 300
    KSVTAKMLED YPAFIRAYDL LFDGEEDVRA RGFLDRRERL TEIVEAAPHD 350
    RFDLSPLVDF TSWEELDQLR SSPPDPVIEG VMIKRRDSAY LAGRAKGPWF 400
    KWKRNPYNVD AVLMYAQRGH GKRSSYYSDF TFGVWSMTPE GEQLVPVGKA 450
    YFGFTDAELE VLDKFVRNNT IDRFGPVRAV RADRDFGFVL EVAFEGINRS 500
    MRHKSGVAMR FPRISRLRPE KPPYEADRLE TLVALIDAKA PAVDE 545
    Length:545
    Mass (Da):61,485
    Last modified:March 24, 2009 - v1
    Checksum:iEC82447D6F11914A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000628 Genomic DNA. Translation: ACM25835.1.
    RefSeqiWP_012651111.1. NC_011985.1.
    YP_002543761.1. NC_011985.1.

    Genome annotation databases

    EnsemblBacteriaiACM25835; ACM25835; Arad_1382.
    GeneIDi7370169.
    KEGGiara:Arad_1382.
    PATRICi20802872. VBIAgrRad129173_3541.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000628 Genomic DNA. Translation: ACM25835.1 .
    RefSeqi WP_012651111.1. NC_011985.1.
    YP_002543761.1. NC_011985.1.

    3D structure databases

    ProteinModelPortali B9JBC9.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 311403.Arad_1382.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACM25835 ; ACM25835 ; Arad_1382 .
    GeneIDi 7370169.
    KEGGi ara:Arad_1382.
    PATRICi 20802872. VBIAgrRad129173_3541.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi NRHKSGV.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci ARAD311403:GHU8-1069-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K84 / ATCC BAA-868Imported.

    Entry informationi

    Entry nameiB9JBC9_AGRRK
    AccessioniPrimary (citable) accession number: B9JBC9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 24, 2009
    Last sequence update: March 24, 2009
    Last modified: October 1, 2014
    This is version 41 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3