B9JA15 (B9JA15_AGRRK) Unreviewed, UniProtKB/TrEMBL
Last modified
May 29, 2013.
Version 35.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize orderNames and origin
| Protein names | Recommended name: Argininosuccinate synthase HAMAP-Rule MF_00005 EC=6.3.4.5 HAMAP-Rule MF_00005 Alternative name(s): Citrulline--aspartate ligase HAMAP-Rule MF_00005 | ||||||
| Gene names |
| ||||||
| Organism | Agrobacterium radiobacter (strain K84 / ATCC BAA-868) [Complete proteome] [HAMAP] EMBL ACM25633.1 | ||||||
| Taxonomic identifier | 311403 [NCBI] | ||||||
| Taxonomic lineage | Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Agrobacterium › Agrobacterium tumefaciens complex › ![]() |
Protein attributes
| Sequence length | 407 AA. |
| Sequence status | Complete. |
| Protein existence | Inferred from homology |
General annotation (Comments)
| Catalytic activity | ATP + L-citrulline + L-aspartate = AMP + diphosphate + N(omega)-(L-arginino)succinate. HAMAP-Rule MF_00005 SAAS SAAS024074 |
| Pathway | Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine and carbamoyl phosphate: step 2/3. HAMAP-Rule MF_00005 SAAS SAAS024074 |
| Subunit structure | Homotetramer By similarity. HAMAP-Rule MF_00005 SAAS SAAS024074 |
| Subcellular location | Cytoplasm By similarity HAMAP-Rule MF_00005 SAAS SAAS024074. |
| Sequence similarities | Belongs to the argininosuccinate synthase family. Type 1 subfamily. HAMAP-Rule MF_00005 |
Ontologies
| Keywords | |
|---|---|
| Biological process | Amino-acid biosynthesis Arginine biosynthesis HAMAP-Rule MF_00005 SAAS SAAS024074 |
| Cellular component | Cytoplasm HAMAP-Rule MF_00005 SAAS SAAS024074 |
| Ligand | ATP-binding SAAS SAAS024074 HAMAP-Rule MF_00005 Nucleotide-binding |
| Molecular function | Ligase HAMAP-Rule MF_00005 SAAS SAAS024074 |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological_process | arginine biosynthetic process Inferred from electronic annotation. Source: HAMAP |
| Cellular_component | cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular_function | ATP binding Inferred from electronic annotation. Source: HAMAP argininosuccinate synthase activityInferred from electronic annotation. Source: HAMAP |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Regions | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Nucleotide binding | 11 – 19 | 9 | ATP By similarity HAMAP-Rule MF_00005 | ||||||
Sites | |||||||||
| Binding site | 38 | 1 | ATP; via amide nitrogen and carbonyl oxygen By similarity HAMAP-Rule MF_00005 | ||||||
| Binding site | 89 | 1 | Citrulline By similarity HAMAP-Rule MF_00005 | ||||||
| Binding site | 94 | 1 | Citrulline By similarity HAMAP-Rule MF_00005 | ||||||
| Binding site | 119 | 1 | ATP; via amide nitrogen By similarity HAMAP-Rule MF_00005 | ||||||
| Binding site | 121 | 1 | Aspartate By similarity HAMAP-Rule MF_00005 | ||||||
| Binding site | 125 | 1 | Aspartate By similarity HAMAP-Rule MF_00005 | ||||||
| Binding site | 125 | 1 | Citrulline By similarity HAMAP-Rule MF_00005 | ||||||
| Binding site | 126 | 1 | Aspartate By similarity HAMAP-Rule MF_00005 | ||||||
| Binding site | 129 | 1 | Citrulline By similarity HAMAP-Rule MF_00005 | ||||||
| Binding site | 180 | 1 | Citrulline By similarity HAMAP-Rule MF_00005 | ||||||
| Binding site | 189 | 1 | Citrulline By similarity HAMAP-Rule MF_00005 | ||||||
| Binding site | 265 | 1 | Citrulline By similarity HAMAP-Rule MF_00005 | ||||||
| Binding site | 277 | 1 | Citrulline By similarity HAMAP-Rule MF_00005 | ||||||
Sequences
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References
| [1] | "Genome sequences of three agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria." Slater S.C., Goldman B.S., Goodner B., Setubal J.C., Farrand S.K., Nester E.W., Burr T.J., Banta L., Dickerman A.W., Paulsen I., Otten L., Suen G., Welch R., Almeida N.F., Arnold F., Burton O.T., Du Z., Ewing A. Wood D.W.J. Bacteriol. 191:2501-2511(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K84 / ATCC BAA-868. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | CP000628 Genomic DNA. Translation: ACM25633.1. |
| RefSeq | YP_002543558.1. NC_011985.1. |
3D structure databases | |
| ProteinModelPortal | B9JA15. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | 311403.Arad_1099. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| EnsemblBacteria | ACM25633; ACM25633; Arad_1099. |
| GeneID | 7369470. |
| KEGG | ara:Arad_1099. |
| PATRIC | 20802442. VBIAgrRad129173_3328. |
Organism-specific databases | |
| CMR | Search... |
Phylogenomic databases | |
| eggNOG | COG0137. |
| HOGENOM | HOG000230093. |
| KO | K01940. |
| OMA | PCSLYSA. |
| ProtClustDB | PRK00509. |
Enzyme and pathway databases | |
| BioCyc | ARAD311403:GHU8-858-MONOMER. |
| UniPathway | UPA00068; UER00113. |
Family and domain databases | |
| Gene3D | 3.40.50.620. 1 hit. 3.90.1260.10. 1 hit. |
| HAMAP | MF_00005. Arg_succ_synth_type1. |
| InterPro | IPR001518. Arginosuc_synth. IPR018223. Arginosuc_synth_CS. IPR023434. Arginosuc_synth_type_1_subfam. IPR024074. AS_cat/multimer_dom_body. IPR014729. Rossmann-like_a/b/a_fold. [Graphical view] |
| PANTHER | PTHR11587. PTHR11587. 1 hit. |
| Pfam | PF00764. Arginosuc_synth. 1 hit. [Graphical view] |
| TIGRFAMs | TIGR00032. argG. 1 hit. |
| PROSITE | PS00564. ARGININOSUCCIN_SYN_1. 1 hit. PS00565. ARGININOSUCCIN_SYN_2. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | B9JA15_AGRRK | ||||||||
| Accession | Primary (citable) accession number: B9JA15 | ||||||||
| Entry history |
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| Entry status | Unreviewed (UniProtKB/TrEMBL) | ||||||||

Clusters with
