B9J8M7 (URED_AGRRK) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Urease accessory protein UreD

Gene names

Name:	ureD
Ordered Locus Names:	Arad_3474

Organism

Agrobacterium radiobacter (strain K84 / ATCC BAA-868) [Complete proteome] [HAMAP]

Taxonomic identifier

311403 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Agrobacterium

Protein attributes

Sequence length	273 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Required for maturation of urease via the functional incorporation of the urease nickel metallocenter By similarity. HAMAP MF_01384
Subunit structure	UreD, UreF and UreG form a complex that acts as a GTP-hydrolysis-dependent molecular chaperone, activating the urease apoprotein by helping to assemble the nickel containing metallocenter of UreC. The UreE protein probably delivers the nickel By similarity.
Subcellular location	Cytoplasm By similarity HAMAP MF_01384.
Sequence similarities	Belongs to the UreD family.

Ontologies

Keywords
Biological process	Nickel insertion
Cellular component	Cytoplasm
Molecular function	Chaperone
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	nitrogen compound metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	nickel cation binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 273	273	Urease accessory protein UreD HAMAP MF_01384		PRO_1000184254

Sequences

	Sequence		Length	Mass (Da)
	B9J8M7 [UniParc]. Last modified March 24, 2009. Version 1. Checksum: FA881B0130BE0571	FASTA	273	29,534
	10 20 30 40 50 60 MTVAAASTRP QRARGRGHLA ARALDGRTRL AELFQEGSAK IRLPATFDNS MEAVIINTAG 70 80 90 100 110 120 GLTGGDRMDW SIVAGPGTRI DVTTQACEKI YKASASTAEV VTSIRAGAGA RVDWLPQETI 130 140 150 160 170 180 LFDRASLSRR LDVDLDETAE FLAVEAILLG RKAMGEAMRQ GLFRDRWRIR RAGRLIHAEE 190 200 210 220 230 240 LRLDGDVAAL TAEHAVLSGQ VAFTTLLYAG PLAETYLAQV RPLVEGHMGG ASQWRDKLVV 250 260 270 RLAASDGFAL RKILIPVISA LRNGAPVPKV WNL

References

[1]

"Genome sequences of three Agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria." Slater S.C., Goldman B.S., Goodner B., Setubal J.C., Farrand S.K., Nester E.W., Burr T.J., Banta L., Dickerman A.W., Paulsen I., Otten L., Suen G., Welch R., Almeida N.F., Arnold F., Burton O.T., Du Z., Ewing A. , Godsy E., Heisel S., Houmiel K.L., Jhaveri J., Lu J., Miller N.M., Norton S., Chen Q., Phoolcharoen W., Ohlin V., Ondrusek D., Pride N., Stricklin S.L., Sun J., Wheeler C., Wilson L., Zhu H., Wood D.W. J. Bacteriol. 191:2501-2511(2009) [PubMed: 19251847] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K84 / ATCC BAA-868.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000628 Genomic DNA. Translation: ACM27415.1.
RefSeq	YP_002545345.1. NC_011985.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	B9J8M7.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7370611.
GenomeReviews	Gene locus Arad_3474 in contig CP000628_GR.
KEGG	ara:Arad_3474.
PATRIC	20806259. VBIAgrRad129173_5209.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	QETILFD.
ProtClustDB	CLSK2487147.
Family and domain databases
HAMAP	MF_01384. UreD. [Tree]
InterPro	IPR002669. UreD. [Graphical view]
KO	K03190.
Pfam	PF01774. UreD. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

URED_AGRRK

Accession

Primary (citable) accession number: B9J8M7

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 28, 2009
Last sequence update:	March 24, 2009
Last modified:	January 25, 2012
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program