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Protein

DNA ligase

Gene

POPTR_0018s13870g

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n)-3'-hydroxyl + 5'-phospho-(deoxyribonucleotide)(m) = (deoxyribonucleotide)(n+m) + AMP + diphosphate.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseUniRule annotationImported
Biological processDNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation
LigandATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:POPTR_0018s13870gImported, POPTR_018G141900v3Imported
OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
Taxonomic identifieri3694 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
Proteomesi
  • UP000006729 Componentsi: Chromosome 18, Linkage group LGXVIII

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Interactioni

Protein-protein interaction databases

STRINGi3694.POPTR_0018s13870.1

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini338 – 487DNA_LIGASE_A3InterPro annotationAdd BLAST150
Domaini660 – 748BRCTInterPro annotationAdd BLAST89
Domaini848 – 918BRCTInterPro annotationAdd BLAST71

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

eggNOGiKOG0966 Eukaryota
COG1793 LUCA
HOGENOMiHOG000083793
InParanoidiB9IN68
KOiK10777
OMAiHMCPSTK
OrthoDBiEOG093600VG

Family and domain databases

CDDicd00027 BRCT, 1 hit
Gene3Di1.10.3260.10, 1 hit
3.40.50.10190, 2 hits
InterProiView protein in InterPro
IPR001357 BRCT_dom
IPR036420 BRCT_dom_sf
IPR000977 DNA_ligase_ATP-dep
IPR012309 DNA_ligase_ATP-dep_C
IPR012310 DNA_ligase_ATP-dep_cent
IPR016059 DNA_ligase_ATP-dep_CS
IPR012308 DNA_ligase_ATP-dep_N
IPR036599 DNA_ligase_N_sf
IPR029710 LIG4
IPR012340 NA-bd_OB-fold
PANTHERiPTHR10459:SF7 PTHR10459:SF7, 1 hit
PfamiView protein in Pfam
PF16589 BRCT_2, 1 hit
PF04679 DNA_ligase_A_C, 1 hit
PF01068 DNA_ligase_A_M, 1 hit
PF04675 DNA_ligase_A_N, 1 hit
SMARTiView protein in SMART
SM00292 BRCT, 1 hit
SUPFAMiSSF117018 SSF117018, 1 hit
SSF50249 SSF50249, 1 hit
SSF52113 SSF52113, 2 hits
TIGRFAMsiTIGR00574 dnl1, 1 hit
PROSITEiView protein in PROSITE
PS50172 BRCT, 2 hits
PS00697 DNA_LIGASE_A1, 1 hit
PS00333 DNA_LIGASE_A2, 1 hit
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Complete.

B9IN68-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSSSSSST AHTKFSILVS LFNWISKTKT SSRKRSKFRK FIDTFCSPSD
60 70 80 90 100
YFSAVRLILP NLDRERGTYG LKESVLAVSL IEALGMSRDS PDALKLINWR
110 120 130 140 150
KGGANATGAN AGNFSLVAAE VLQRRQGTVS GGLTIEELNG LLDKLASSEN
160 170 180 190 200
RGEKTAVLAA LINKTNTQEM KWIIMIILKD LKLGMSEKSV FHEFHPDAED
210 220 230 240 250
LFNVTCDLKL VCEKLRDRNQ RHKRQDIEVG KAVRPQLAMR VSDAHAAWKK
260 270 280 290 300
LHGKEVVVEC KFDGDRIQIH KNGAEVHYFS RNFLDHSEYA HGMSDIIVQN
310 320 330 340 350
VLDERCILDG EMLVWDTSLN RFAEFGSNQE IAKAARDGLD SDRQLCYVAF
360 370 380 390 400
DILYVGDTSV IHQTLKERHE LLRKVVKPVK GRLEILVPNG GLNAHRLPGE
410 420 430 440 450
PYCSLIAYNV DDIEKFFKET IENRDEGIVL KDLGSKWEPS DRSGKWLKLK
460 470 480 490 500
PEYIRAGSDL DVLIIGGYYG SGRRGGEVAQ FLLGLAERPA SNTYPRRFIS
510 520 530 540 550
FCRVGNGLSD EELDTVVSKL KPYFRKNEYP KNSPPSFYQV TNNSKERPDV
560 570 580 590 600
WIENPDKSII LSITSDIRTI SSEVFSAPYS LRFPRIDRVR YDKPWHECLD
610 620 630 640 650
VQSFVELVHS SNGTTQKGKG YGYVQDSKPT HIKSSRKGEK KSVSVVPSHL
660 670 680 690 700
IQTDISDIKG ETLIFSNMMF YFVNVPPSNS LESLHKMVAE NGGTFSMNLN
710 720 730 740 750
NSVTHCIAAE SKGIKYQAAK LHGDIIHYSW VLDCCLQKKL LPLQPKSFLF
760 770 780 790 800
LSDGSKKKLH EEIDEFSDSY YWDLDLSDIK QLLSNINASE DAKAIDDLKQ
810 820 830 840 850
KYCPEEKWSL FHGCCVYFHI SRESLTPDWE SLLGLAFRRL KLEIFMGGGK
860 870 880 890 900
VSNNIAHATH LVVLIVPASD VDFGSLVKSF TTAEKHFLLN KRLYVIGSQW
910 920 930 940 950
LEDSLERGQK LLEDTYNLKP SGLEESNCKE VLPSVTDSEA KEKGSKAALK
960 970 980 990 1000
DSNKLGSLEK ETTRKRGRPA GESTKKGKIG AGQARRTRAR IVNKPAKISV
1010 1020 1030 1040 1050
EKSDESCSHD DKNEENDMSD GNEEIHGGKP AGRPAGGSTK KGKIGAGQAL
1060 1070 1080 1090 1100
RTRTRIANKP AKILEEKSEE SCLHDDEIEE NEMSEGNEEI HGPVSKYNLD
1110 1120 1130 1140 1150
IQQTTTVEDS ESSRRDKAKE ETAEENRHEE WLDKAPDVEM SERYYDQVTE
1160 1170 1180 1190 1200
KPEKLEVMVD PVHAILMDMI PSLGMKKGET TNPTIGNEKQ AEGPYAQPSL
1210 1220 1230 1240
SMKKVENTTP TLDTEKPSEN PSLLPVKKKV SYKDLAAKLL MN
Length:1,242
Mass (Da):139,369
Last modified:December 11, 2013 - v2
Checksum:iC90CEB0E3DE21298
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000354 Genomic DNA Translation: EEF03827.2
CM009307 Genomic DNA Translation: PNS94342.1
RefSeqiXP_002325262.2, XM_002325226.2

Genome annotation databases

EnsemblPlantsiPOPTR_0018s13870.1; POPTR_0018s13870.1; POPTR_0018s13870
GeneIDi7484065
GrameneiPOPTR_0018s13870.1; POPTR_0018s13870.1; POPTR_0018s13870
KEGGipop:POPTR_0018s13870g

Similar proteinsi

Entry informationi

Entry nameiB9IN68_POPTR
AccessioniPrimary (citable) accession number: B9IN68
Entry historyiIntegrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: December 11, 2013
Last modified: May 23, 2018
This is version 69 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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