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B9IN68

- B9IN68_POPTR

UniProt

B9IN68 - B9IN68_POPTR

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Protein

DNA ligase

Gene

POPTR_0018s13870g

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: EnsemblPlants/Gramene
  3. DNA ligase (ATP) activity Source: UniProtKB-EC
  4. metal ion binding Source: EnsemblPlants/Gramene

GO - Biological processi

  1. DNA biosynthetic process Source: InterPro
  2. DNA ligation involved in DNA repair Source: EnsemblPlants/Gramene
  3. DNA recombination Source: UniProtKB-KW
  4. DNA replication Source: UniProtKB-KW
  5. double-strand break repair Source: EnsemblPlants/Gramene
  6. response to X-ray Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotationImported

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:POPTR_0018s13870gImported
OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
Taxonomic identifieri3694 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
ProteomesiUP000006729: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

  1. apoplast Source: EnsemblPlants/Gramene
  2. nucleus Source: EnsemblPlants/Gramene
  3. plasmodesma Source: EnsemblPlants/Gramene
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi3694.gw1.XVIII.461.1.

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000083793.
InParanoidiB9IN68.
KOiK10777.
OMAiQSLTERH.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 1 hit.
InterProiIPR017956. AT_hook_DNA-bd_motif.
IPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR029710. LIG4.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PANTHERiPTHR10459:SF7. PTHR10459:SF7. 1 hit.
PfamiPF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SMARTiSM00384. AT_hook. 2 hits.
SM00292. BRCT. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B9IN68-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MASSSSSSST AHTKFSILVS LFNWISKTKT SSRKRSKFRK FIDTFCSPSD
60 70 80 90 100
YFSAVRLILP NLDRERGTYG LKESVLAVSL IEALGMSRDS PDALKLINWR
110 120 130 140 150
KGGANATGAN AGNFSLVAAE VLQRRQGTVS GGLTIEELNG LLDKLASSEN
160 170 180 190 200
RGEKTAVLAA LINKTNTQEM KWIIMIILKD LKLGMSEKSV FHEFHPDAED
210 220 230 240 250
LFNVTCDLKL VCEKLRDRNQ RHKRQDIEVG KAVRPQLAMR VSDAHAAWKK
260 270 280 290 300
LHGKEVVVEC KFDGDRIQIH KNGAEVHYFS RNFLDHSEYA HGMSDIIVQN
310 320 330 340 350
VLDERCILDG EMLVWDTSLN RFAEFGSNQE IAKAARDGLD SDRQLCYVAF
360 370 380 390 400
DILYVGDTSV IHQTLKERHE LLRKVVKPVK GRLEILVPNG GLNAHRLPGE
410 420 430 440 450
PYCSLIAYNV DDIEKFFKET IENRDEGIVL KDLGSKWEPS DRSGKWLKLK
460 470 480 490 500
PEYIRAGSDL DVLIIGGYYG SGRRGGEVAQ FLLGLAERPA SNTYPRRFIS
510 520 530 540 550
FCRVGNGLSD EELDTVVSKL KPYFRKNEYP KNSPPSFYQV TNNSKERPDV
560 570 580 590 600
WIENPDKSII LSITSDIRTI SSEVFSAPYS LRFPRIDRVR YDKPWHECLD
610 620 630 640 650
VQSFVELVHS SNGTTQKGKG YGYVQDSKPT HIKSSRKGEK KSVSVVPSHL
660 670 680 690 700
IQTDISDIKG ETLIFSNMMF YFVNVPPSNS LESLHKMVAE NGGTFSMNLN
710 720 730 740 750
NSVTHCIAAE SKGIKYQAAK LHGDIIHYSW VLDCCLQKKL LPLQPKSFLF
760 770 780 790 800
LSDGSKKKLH EEIDEFSDSY YWDLDLSDIK QLLSNINASE DAKAIDDLKQ
810 820 830 840 850
KYCPEEKWSL FHGCCVYFHI SRESLTPDWE SLLGLAFRRL KLEIFMGGGK
860 870 880 890 900
VSNNIAHATH LVVLIVPASD VDFGSLVKSF TTAEKHFLLN KRLYVIGSQW
910 920 930 940 950
LEDSLERGQK LLEDTYNLKP SGLEESNCKE VLPSVTDSEA KEKGSKAALK
960 970 980 990 1000
DSNKLGSLEK ETTRKRGRPA GESTKKGKIG AGQARRTRAR IVNKPAKISV
1010 1020 1030 1040 1050
EKSDESCSHD DKNEENDMSD GNEEIHGGKP AGRPAGGSTK KGKIGAGQAL
1060 1070 1080 1090 1100
RTRTRIANKP AKILEEKSEE SCLHDDEIEE NEMSEGNEEI HGPVSKYNLD
1110 1120 1130 1140 1150
IQQTTTVEDS ESSRRDKAKE ETAEENRHEE WLDKAPDVEM SERYYDQVTE
1160 1170 1180 1190 1200
KPEKLEVMVD PVHAILMDMI PSLGMKKGET TNPTIGNEKQ AEGPYAQPSL
1210 1220 1230 1240
SMKKVENTTP TLDTEKPSEN PSLLPVKKKV SYKDLAAKLL MN
Length:1,242
Mass (Da):139,369
Last modified:December 11, 2013 - v2
Checksum:iC90CEB0E3DE21298
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000354 Genomic DNA. Translation: EEF03827.2.
RefSeqiXP_002325262.2. XM_002325226.2.

Genome annotation databases

GeneIDi7484065.
KEGGipop:POPTR_0018s13870g.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000354 Genomic DNA. Translation: EEF03827.2 .
RefSeqi XP_002325262.2. XM_002325226.2.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3694.gw1.XVIII.461.1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 7484065.
KEGGi pop:POPTR_0018s13870g.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000083793.
InParanoidi B9IN68.
KOi K10777.
OMAi QSLTERH.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 1 hit.
InterProi IPR017956. AT_hook_DNA-bd_motif.
IPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR029710. LIG4.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
PANTHERi PTHR10459:SF7. PTHR10459:SF7. 1 hit.
Pfami PF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SMARTi SM00384. AT_hook. 2 hits.
SM00292. BRCT. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
    Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A.
    , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
    Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NisquallyImported.

Entry informationi

Entry nameiB9IN68_POPTR
AccessioniPrimary (citable) accession number: B9IN68
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: December 11, 2013
Last modified: October 29, 2014
This is version 45 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3