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B9IN68 (B9IN68_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 42. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length1242 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Sequences

Sequence LengthMass (Da)Tools
B9IN68 [UniParc].

Last modified December 11, 2013. Version 2.
Checksum: C90CEB0E3DE21298

FASTA1,242139,369
        10         20         30         40         50         60 
MASSSSSSST AHTKFSILVS LFNWISKTKT SSRKRSKFRK FIDTFCSPSD YFSAVRLILP 

        70         80         90        100        110        120 
NLDRERGTYG LKESVLAVSL IEALGMSRDS PDALKLINWR KGGANATGAN AGNFSLVAAE 

       130        140        150        160        170        180 
VLQRRQGTVS GGLTIEELNG LLDKLASSEN RGEKTAVLAA LINKTNTQEM KWIIMIILKD 

       190        200        210        220        230        240 
LKLGMSEKSV FHEFHPDAED LFNVTCDLKL VCEKLRDRNQ RHKRQDIEVG KAVRPQLAMR 

       250        260        270        280        290        300 
VSDAHAAWKK LHGKEVVVEC KFDGDRIQIH KNGAEVHYFS RNFLDHSEYA HGMSDIIVQN 

       310        320        330        340        350        360 
VLDERCILDG EMLVWDTSLN RFAEFGSNQE IAKAARDGLD SDRQLCYVAF DILYVGDTSV 

       370        380        390        400        410        420 
IHQTLKERHE LLRKVVKPVK GRLEILVPNG GLNAHRLPGE PYCSLIAYNV DDIEKFFKET 

       430        440        450        460        470        480 
IENRDEGIVL KDLGSKWEPS DRSGKWLKLK PEYIRAGSDL DVLIIGGYYG SGRRGGEVAQ 

       490        500        510        520        530        540 
FLLGLAERPA SNTYPRRFIS FCRVGNGLSD EELDTVVSKL KPYFRKNEYP KNSPPSFYQV 

       550        560        570        580        590        600 
TNNSKERPDV WIENPDKSII LSITSDIRTI SSEVFSAPYS LRFPRIDRVR YDKPWHECLD 

       610        620        630        640        650        660 
VQSFVELVHS SNGTTQKGKG YGYVQDSKPT HIKSSRKGEK KSVSVVPSHL IQTDISDIKG 

       670        680        690        700        710        720 
ETLIFSNMMF YFVNVPPSNS LESLHKMVAE NGGTFSMNLN NSVTHCIAAE SKGIKYQAAK 

       730        740        750        760        770        780 
LHGDIIHYSW VLDCCLQKKL LPLQPKSFLF LSDGSKKKLH EEIDEFSDSY YWDLDLSDIK 

       790        800        810        820        830        840 
QLLSNINASE DAKAIDDLKQ KYCPEEKWSL FHGCCVYFHI SRESLTPDWE SLLGLAFRRL 

       850        860        870        880        890        900 
KLEIFMGGGK VSNNIAHATH LVVLIVPASD VDFGSLVKSF TTAEKHFLLN KRLYVIGSQW 

       910        920        930        940        950        960 
LEDSLERGQK LLEDTYNLKP SGLEESNCKE VLPSVTDSEA KEKGSKAALK DSNKLGSLEK 

       970        980        990       1000       1010       1020 
ETTRKRGRPA GESTKKGKIG AGQARRTRAR IVNKPAKISV EKSDESCSHD DKNEENDMSD 

      1030       1040       1050       1060       1070       1080 
GNEEIHGGKP AGRPAGGSTK KGKIGAGQAL RTRTRIANKP AKILEEKSEE SCLHDDEIEE 

      1090       1100       1110       1120       1130       1140 
NEMSEGNEEI HGPVSKYNLD IQQTTTVEDS ESSRRDKAKE ETAEENRHEE WLDKAPDVEM 

      1150       1160       1170       1180       1190       1200 
SERYYDQVTE KPEKLEVMVD PVHAILMDMI PSLGMKKGET TNPTIGNEKQ AEGPYAQPSL 

      1210       1220       1230       1240 
SMKKVENTTP TLDTEKPSEN PSLLPVKKKV SYKDLAAKLL MN 

« Hide

References

« Hide 'large scale' references
[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.
[2]US DOE Joint Genome Institute (JGI-PGF)
Grigoriev I.V., Terry A., Salamov A.A., Otillar R., Lou Y., Lucas S., Hammon N., Glavina del Rio T., Detter J., Kalin E., Tice H., Pitluck S., Chapman J., Putnam N.H., Brunner A., Busov V., Campbell M., Chalot M. expand/collapse author list , Covert S., Davis J., DiFazio S., Gribskov M., Gunter L., Hamberger B., Jansson S., Joshi C., Larimer F., Martin F., Napoli C., Nelson D., Ralph S., Rombauts S., Rouze P., Schrader J., Tsai C., Vahala J., Tuskan G., Rokhsar D.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000354 Genomic DNA. Translation: EEF03827.2.
RefSeqXP_002325262.2. XM_002325226.2.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING3694.gw1.XVIII.461.1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7484065.
KEGGpop:POPTR_0018s13870g.

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000083793.
KOK10777.
OMAQSLTERH.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 1 hit.
InterProIPR017956. AT_hook_DNA-bd_motif.
IPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SMARTSM00384. AT_hook. 2 hits.
SM00292. BRCT. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9IN68_POPTR
AccessionPrimary (citable) accession number: B9IN68
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: December 11, 2013
Last modified: June 11, 2014
This is version 42 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)