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B9IN68

- B9IN68_POPTR

UniProt

B9IN68 - B9IN68_POPTR

Protein

DNA ligase

Gene

POPTR_0018s13870g

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 44 (01 Oct 2014)
      Sequence version 2 (11 Dec 2013)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW
    4. double-strand break repair Source: EnsemblPlants/Gramene
    5. response to X-ray Source: EnsemblPlants/Gramene

    Keywords - Molecular functioni

    LigaseUniRule annotationImported

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    ORF Names:POPTR_0018s13870gImported
    OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
    Taxonomic identifieri3694 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
    ProteomesiUP000006729: Unassembled WGS sequence

    Subcellular locationi

    GO - Cellular componenti

    1. apoplast Source: EnsemblPlants/Gramene
    2. plasmodesma Source: EnsemblPlants/Gramene

    Interactioni

    Protein-protein interaction databases

    STRINGi3694.gw1.XVIII.461.1.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ATP-dependent DNA ligase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000083793.
    KOiK10777.
    OMAiQSLTERH.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    3.40.50.10190. 1 hit.
    InterProiIPR017956. AT_hook_DNA-bd_motif.
    IPR001357. BRCT_dom.
    IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF00533. BRCT. 1 hit.
    PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SMARTiSM00384. AT_hook. 2 hits.
    SM00292. BRCT. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    SSF52113. SSF52113. 2 hits.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS50172. BRCT. 2 hits.
    PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B9IN68-1 [UniParc]FASTAAdd to Basket

    « Hide

    MASSSSSSST AHTKFSILVS LFNWISKTKT SSRKRSKFRK FIDTFCSPSD     50
    YFSAVRLILP NLDRERGTYG LKESVLAVSL IEALGMSRDS PDALKLINWR 100
    KGGANATGAN AGNFSLVAAE VLQRRQGTVS GGLTIEELNG LLDKLASSEN 150
    RGEKTAVLAA LINKTNTQEM KWIIMIILKD LKLGMSEKSV FHEFHPDAED 200
    LFNVTCDLKL VCEKLRDRNQ RHKRQDIEVG KAVRPQLAMR VSDAHAAWKK 250
    LHGKEVVVEC KFDGDRIQIH KNGAEVHYFS RNFLDHSEYA HGMSDIIVQN 300
    VLDERCILDG EMLVWDTSLN RFAEFGSNQE IAKAARDGLD SDRQLCYVAF 350
    DILYVGDTSV IHQTLKERHE LLRKVVKPVK GRLEILVPNG GLNAHRLPGE 400
    PYCSLIAYNV DDIEKFFKET IENRDEGIVL KDLGSKWEPS DRSGKWLKLK 450
    PEYIRAGSDL DVLIIGGYYG SGRRGGEVAQ FLLGLAERPA SNTYPRRFIS 500
    FCRVGNGLSD EELDTVVSKL KPYFRKNEYP KNSPPSFYQV TNNSKERPDV 550
    WIENPDKSII LSITSDIRTI SSEVFSAPYS LRFPRIDRVR YDKPWHECLD 600
    VQSFVELVHS SNGTTQKGKG YGYVQDSKPT HIKSSRKGEK KSVSVVPSHL 650
    IQTDISDIKG ETLIFSNMMF YFVNVPPSNS LESLHKMVAE NGGTFSMNLN 700
    NSVTHCIAAE SKGIKYQAAK LHGDIIHYSW VLDCCLQKKL LPLQPKSFLF 750
    LSDGSKKKLH EEIDEFSDSY YWDLDLSDIK QLLSNINASE DAKAIDDLKQ 800
    KYCPEEKWSL FHGCCVYFHI SRESLTPDWE SLLGLAFRRL KLEIFMGGGK 850
    VSNNIAHATH LVVLIVPASD VDFGSLVKSF TTAEKHFLLN KRLYVIGSQW 900
    LEDSLERGQK LLEDTYNLKP SGLEESNCKE VLPSVTDSEA KEKGSKAALK 950
    DSNKLGSLEK ETTRKRGRPA GESTKKGKIG AGQARRTRAR IVNKPAKISV 1000
    EKSDESCSHD DKNEENDMSD GNEEIHGGKP AGRPAGGSTK KGKIGAGQAL 1050
    RTRTRIANKP AKILEEKSEE SCLHDDEIEE NEMSEGNEEI HGPVSKYNLD 1100
    IQQTTTVEDS ESSRRDKAKE ETAEENRHEE WLDKAPDVEM SERYYDQVTE 1150
    KPEKLEVMVD PVHAILMDMI PSLGMKKGET TNPTIGNEKQ AEGPYAQPSL 1200
    SMKKVENTTP TLDTEKPSEN PSLLPVKKKV SYKDLAAKLL MN 1242
    Length:1,242
    Mass (Da):139,369
    Last modified:December 11, 2013 - v2
    Checksum:iC90CEB0E3DE21298
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000354 Genomic DNA. Translation: EEF03827.2.
    RefSeqiXP_002325262.2. XM_002325226.2.

    Genome annotation databases

    GeneIDi7484065.
    KEGGipop:POPTR_0018s13870g.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000354 Genomic DNA. Translation: EEF03827.2 .
    RefSeqi XP_002325262.2. XM_002325226.2.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3694.gw1.XVIII.461.1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 7484065.
    KEGGi pop:POPTR_0018s13870g.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000083793.
    KOi K10777.
    OMAi QSLTERH.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    3.40.50.10190. 1 hit.
    InterProi IPR017956. AT_hook_DNA-bd_motif.
    IPR001357. BRCT_dom.
    IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF00533. BRCT. 1 hit.
    PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SMARTi SM00384. AT_hook. 2 hits.
    SM00292. BRCT. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    SSF52113. SSF52113. 2 hits.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS50172. BRCT. 2 hits.
    PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
      Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A.
      , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
      Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. NisquallyImported.

    Entry informationi

    Entry nameiB9IN68_POPTR
    AccessioniPrimary (citable) accession number: B9IN68
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 24, 2009
    Last sequence update: December 11, 2013
    Last modified: October 1, 2014
    This is version 44 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3