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B9IM30 (B9IM30_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 42. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length477 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-xylopyranose = D-xylulose. RuleBase RU000609

Sequence similarities

Belongs to the xylose isomerase family. RuleBase RU000609

Sequences

Sequence LengthMass (Da)Tools
B9IM30 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: D116965D4A571364

FASTA47753,098
        10         20         30         40         50         60 
MKGGRILLLL VCSSVITLGV FAAGPPTCPA DLGGKCSDSG EWEGEFFPGI PKIKYEGPSS 

        70         80         90        100        110        120 
KNPLAFKWYN AEEEILGKKM KDWMRFSIAF WHTFRGTGGD PFGAPTKYWP WEDGTNSLAM 

       130        140        150        160        170        180 
AKRRMRANFE FLEKIGVDRW CFHDRDIAPD GETLEESNKN LDEVVALAKE LQGTKIRPLW 

       190        200        210        220        230        240 
GTAQLFMHPR YMHGGATSSE LGVYAYAAAQ VKKAMEVTHD LGGENYVFWG GREGYQSLLN 

       250        260        270        280        290        300 
TDMERELDHL ARFCEAAVAY KKKIGFIGTL LIEPKPQEPT KHQYDWDAAT TANFLRKYGL 

       310        320        330        340        350        360 
IGEFKLNIEC NHATLSGHSC HHELETARIN GLLGNIDANT GDPQIGWDTD QFMTDISEAT 

       370        380        390        400        410        420 
MVMISVIRNG GLAPGGFNFD AKLRRESTEV EDIFLAHISG MDTLARGLRS AAKLIQDGSL 

       430        440        450        460        470 
AELVRKRYQS FDTEIGAQIE AGKGDFETLE KLAMKWGEPK VPSAKQELAE MIFQSAL 

« Hide

References

« Hide 'large scale' references
[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.
[2]US DOE Joint Genome Institute (JGI-PGF)
Grigoriev I.V., Terry A., Salamov A.A., Otillar R., Lou Y., Lucas S., Hammon N., Glavina del Rio T., Detter J., Kalin E., Tice H., Pitluck S., Chapman J., Putnam N.H., Brunner A., Busov V., Campbell M., Chalot M. expand/collapse author list , Covert S., Davis J., DiFazio S., Gribskov M., Gunter L., Hamberger B., Jansson S., Joshi C., Larimer F., Martin F., Napoli C., Nelson D., Ralph S., Rombauts S., Rouze P., Schrader J., Tsai C., Vahala J., Tuskan G., Rokhsar D.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000354 Genomic DNA. Translation: EEF03053.1.
RefSeqXP_002324488.1. XM_002324452.2.

3D structure databases

ProteinModelPortalB9IM30.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING3694.estExt_Genewise1_v1.C_LG_XVIII2895.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsPOPTR_0018s10460.1; POPTR_0018s10460.1; POPTR_0018s10460.
GeneID7488994.
KEGGpop:POPTR_0018s10460g.

Phylogenomic databases

eggNOGCOG2115.
HOGENOMHOG000252293.
KOK01805.
OMASTDVEDM.

Family and domain databases

Gene3D3.20.20.150. 1 hit.
HAMAPMF_00455. Xylose_isom_A.
InterProIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSPR00688. XYLOSISMRASE.
SUPFAMSSF51658. SSF51658. 1 hit.
TIGRFAMsTIGR02630. xylose_isom_A. 1 hit.
PROSITEPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9IM30_POPTR
AccessionPrimary (citable) accession number: B9IM30
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: May 14, 2014
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)