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Protein

Xylose isomerase

Gene

POPTR_0018s10460g

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

D-xylopyranose = D-xylulose.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. xylose isomerase activity Source: UniProtKB-EC

GO - Biological processi

  1. D-xylose metabolic process Source: UniProtKB-KW
  2. pentose-phosphate shunt Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotation

Keywords - Biological processi

Carbohydrate metabolism, Pentose shuntUniRule annotation, Xylose metabolismUniRule annotation

Keywords - Ligandi

Metal-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
Gene namesi
ORF Names:POPTR_0018s10460gImported
OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
Taxonomic identifieri3694 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
ProteomesiUP000006729: Linkage group LGXVIII

Subcellular locationi

GO - Cellular componenti

  1. endoplasmic reticulum Source: EnsemblPlants/Gramene
  2. Golgi apparatus Source: EnsemblPlants/Gramene
  3. vacuolar membrane Source: EnsemblPlants/Gramene
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi3694.estExt_Genewise1_v1.C_LG_XVIII2895.

Structurei

3D structure databases

ProteinModelPortaliB9IM30.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the xylose isomerase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG2115.
HOGENOMiHOG000252293.
InParanoidiB9IM30.
KOiK01805.
OMAiTYAKGLK.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
HAMAPiMF_00455. Xylose_isom_A.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSiPR00688. XYLOSISMRASE.
SUPFAMiSSF51658. SSF51658. 1 hit.
TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B9IM30-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKGGRILLLL VCSSVITLGV FAAGPPTCPA DLGGKCSDSG EWEGEFFPGI
60 70 80 90 100
PKIKYEGPSS KNPLAFKWYN AEEEILGKKM KDWMRFSIAF WHTFRGTGGD
110 120 130 140 150
PFGAPTKYWP WEDGTNSLAM AKRRMRANFE FLEKIGVDRW CFHDRDIAPD
160 170 180 190 200
GETLEESNKN LDEVVALAKE LQGTKIRPLW GTAQLFMHPR YMHGGATSSE
210 220 230 240 250
LGVYAYAAAQ VKKAMEVTHD LGGENYVFWG GREGYQSLLN TDMERELDHL
260 270 280 290 300
ARFCEAAVAY KKKIGFIGTL LIEPKPQEPT KHQYDWDAAT TANFLRKYGL
310 320 330 340 350
IGEFKLNIEC NHATLSGHSC HHELETARIN GLLGNIDANT GDPQIGWDTD
360 370 380 390 400
QFMTDISEAT MVMISVIRNG GLAPGGFNFD AKLRRESTEV EDIFLAHISG
410 420 430 440 450
MDTLARGLRS AAKLIQDGSL AELVRKRYQS FDTEIGAQIE AGKGDFETLE
460 470
KLAMKWGEPK VPSAKQELAE MIFQSAL
Length:477
Mass (Da):53,098
Last modified:March 24, 2009 - v1
Checksum:iD116965D4A571364
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000354 Genomic DNA. Translation: EEF03053.1.
RefSeqiXP_002324488.1. XM_002324452.2.

Genome annotation databases

EnsemblPlantsiPOPTR_0018s10460.1; POPTR_0018s10460.1; POPTR_0018s10460.
GeneIDi7488994.
KEGGipop:POPTR_0018s10460g.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000354 Genomic DNA. Translation: EEF03053.1.
RefSeqiXP_002324488.1. XM_002324452.2.

3D structure databases

ProteinModelPortaliB9IM30.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3694.estExt_Genewise1_v1.C_LG_XVIII2895.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiPOPTR_0018s10460.1; POPTR_0018s10460.1; POPTR_0018s10460.
GeneIDi7488994.
KEGGipop:POPTR_0018s10460g.

Phylogenomic databases

eggNOGiCOG2115.
HOGENOMiHOG000252293.
InParanoidiB9IM30.
KOiK01805.
OMAiTYAKGLK.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
HAMAPiMF_00455. Xylose_isom_A.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSiPR00688. XYLOSISMRASE.
SUPFAMiSSF51658. SSF51658. 1 hit.
TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
    Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A.
    , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
    Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NisquallyImported.

Entry informationi

Entry nameiB9IM30_POPTR
AccessioniPrimary (citable) accession number: B9IM30
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: January 7, 2015
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.