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Protein

Xylose isomerase

Gene

POPTR_0018s10460g

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

D-xylopyranose = D-xylulose.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionIsomeraseUniRule annotation
Biological processCarbohydrate metabolism, Xylose metabolismUniRule annotation
LigandMetal-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
Gene namesi
ORF Names:POPTR_0018s10460gImported, POPTR_T093900v3Imported
OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
Taxonomic identifieri3694 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
Proteomesi
  • UP000006729 Componenti: Linkage group LGXVIII

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 22Sequence analysisAdd BLAST22
ChainiPRO_501430129523 – 477Xylose isomeraseSequence analysisAdd BLAST455

Interactioni

Protein-protein interaction databases

STRINGi3694.POPTR_0018s10460.1

Structurei

3D structure databases

ProteinModelPortaliB9IM30
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili154 – 174Sequence analysisAdd BLAST21

Sequence similaritiesi

Belongs to the xylose isomerase family.UniRule annotation

Keywords - Domaini

Coiled coilSequence analysis, SignalSequence analysis

Phylogenomic databases

eggNOGiENOG410IG6W Eukaryota
COG2115 LUCA
HOGENOMiHOG000252293
InParanoidiB9IM30
KOiK01805
OMAiHTFQHEL
OrthoDBiEOG093609VP

Family and domain databases

HAMAPiMF_00455 Xylose_isom_A, 1 hit
InterProiView protein in InterPro
IPR036237 Xyl_isomerase-like_sf
IPR013452 Xylose_isom_bac
IPR001998 Xylose_isomerase
PANTHERiPTHR32176:SF0 PTHR32176:SF0, 1 hit
PRINTSiPR00688 XYLOSISMRASE
SUPFAMiSSF51658 SSF51658, 1 hit
TIGRFAMsiTIGR02630 xylose_isom_A, 1 hit
PROSITEiView protein in PROSITE
PS51415 XYLOSE_ISOMERASE, 1 hit

Sequencei

Sequence statusi: Complete.

B9IM30-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKGGRILLLL VCSSVITLGV FAAGPPTCPA DLGGKCSDSG EWEGEFFPGI
60 70 80 90 100
PKIKYEGPSS KNPLAFKWYN AEEEILGKKM KDWMRFSIAF WHTFRGTGGD
110 120 130 140 150
PFGAPTKYWP WEDGTNSLAM AKRRMRANFE FLEKIGVDRW CFHDRDIAPD
160 170 180 190 200
GETLEESNKN LDEVVALAKE LQGTKIRPLW GTAQLFMHPR YMHGGATSSE
210 220 230 240 250
LGVYAYAAAQ VKKAMEVTHD LGGENYVFWG GREGYQSLLN TDMERELDHL
260 270 280 290 300
ARFCEAAVAY KKKIGFIGTL LIEPKPQEPT KHQYDWDAAT TANFLRKYGL
310 320 330 340 350
IGEFKLNIEC NHATLSGHSC HHELETARIN GLLGNIDANT GDPQIGWDTD
360 370 380 390 400
QFMTDISEAT MVMISVIRNG GLAPGGFNFD AKLRRESTEV EDIFLAHISG
410 420 430 440 450
MDTLARGLRS AAKLIQDGSL AELVRKRYQS FDTEIGAQIE AGKGDFETLE
460 470
KLAMKWGEPK VPSAKQELAE MIFQSAL
Length:477
Mass (Da):53,098
Last modified:March 24, 2009 - v1
Checksum:iD116965D4A571364
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000354 Genomic DNA Translation: EEF03053.1
KZ623412 Genomic DNA Translation: PNS23047.1
KZ623412 Genomic DNA Translation: PNS23048.1
KZ623412 Genomic DNA Translation: PNS23049.1
KZ623412 Genomic DNA Translation: PNS23050.1
RefSeqiXP_002324488.1, XM_002324452.2

Genome annotation databases

EnsemblPlantsiPOPTR_0018s10460.1; POPTR_0018s10460.1; POPTR_0018s10460
GeneIDi7488994
GrameneiPOPTR_0018s10460.1; POPTR_0018s10460.1; POPTR_0018s10460
KEGGipop:POPTR_0018s10460g

Similar proteinsi

Entry informationi

Entry nameiB9IM30_POPTR
AccessioniPrimary (citable) accession number: B9IM30
Entry historyiIntegrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: April 25, 2018
This is version 64 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health