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B9IM30

- B9IM30_POPTR

UniProt

B9IM30 - B9IM30_POPTR

Protein

Xylose isomerase

Gene

POPTR_0018s10460g

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 44 (01 Oct 2014)
      Sequence version 1 (24 Mar 2009)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    D-xylopyranose = D-xylulose.UniRule annotation

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. xylose isomerase activity Source: UniProtKB-EC

    GO - Biological processi

    1. D-xylose metabolic process Source: UniProtKB-KW
    2. pentose-phosphate shunt Source: UniProtKB-KW

    Keywords - Molecular functioni

    IsomeraseUniRule annotation

    Keywords - Biological processi

    Carbohydrate metabolism, Pentose shuntUniRule annotation, Xylose metabolismUniRule annotation

    Keywords - Ligandi

    Metal-bindingUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
    Gene namesi
    ORF Names:POPTR_0018s10460gImported
    OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
    Taxonomic identifieri3694 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
    ProteomesiUP000006729: Unassembled WGS sequence

    Subcellular locationi

    GO - Cellular componenti

    1. endoplasmic reticulum Source: EnsemblPlants/Gramene
    2. Golgi apparatus Source: EnsemblPlants/Gramene
    3. vacuolar membrane Source: EnsemblPlants/Gramene

    Interactioni

    Protein-protein interaction databases

    STRINGi3694.estExt_Genewise1_v1.C_LG_XVIII2895.

    Structurei

    3D structure databases

    ProteinModelPortaliB9IM30.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the xylose isomerase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG2115.
    HOGENOMiHOG000252293.
    KOiK01805.
    OMAiSTDVEDM.

    Family and domain databases

    Gene3Di3.20.20.150. 1 hit.
    HAMAPiMF_00455. Xylose_isom_A.
    InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013452. Xylose_isom_bac.
    IPR001998. Xylose_isomerase.
    [Graphical view]
    PfamiPF01261. AP_endonuc_2. 1 hit.
    [Graphical view]
    PRINTSiPR00688. XYLOSISMRASE.
    SUPFAMiSSF51658. SSF51658. 1 hit.
    TIGRFAMsiTIGR02630. xylose_isom_A. 1 hit.
    PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B9IM30-1 [UniParc]FASTAAdd to Basket

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    MKGGRILLLL VCSSVITLGV FAAGPPTCPA DLGGKCSDSG EWEGEFFPGI    50
    PKIKYEGPSS KNPLAFKWYN AEEEILGKKM KDWMRFSIAF WHTFRGTGGD 100
    PFGAPTKYWP WEDGTNSLAM AKRRMRANFE FLEKIGVDRW CFHDRDIAPD 150
    GETLEESNKN LDEVVALAKE LQGTKIRPLW GTAQLFMHPR YMHGGATSSE 200
    LGVYAYAAAQ VKKAMEVTHD LGGENYVFWG GREGYQSLLN TDMERELDHL 250
    ARFCEAAVAY KKKIGFIGTL LIEPKPQEPT KHQYDWDAAT TANFLRKYGL 300
    IGEFKLNIEC NHATLSGHSC HHELETARIN GLLGNIDANT GDPQIGWDTD 350
    QFMTDISEAT MVMISVIRNG GLAPGGFNFD AKLRRESTEV EDIFLAHISG 400
    MDTLARGLRS AAKLIQDGSL AELVRKRYQS FDTEIGAQIE AGKGDFETLE 450
    KLAMKWGEPK VPSAKQELAE MIFQSAL 477
    Length:477
    Mass (Da):53,098
    Last modified:March 24, 2009 - v1
    Checksum:iD116965D4A571364
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000354 Genomic DNA. Translation: EEF03053.1.
    RefSeqiXP_002324488.1. XM_002324452.2.

    Genome annotation databases

    EnsemblPlantsiPOPTR_0018s10460.1; POPTR_0018s10460.1; POPTR_0018s10460.
    GeneIDi7488994.
    KEGGipop:POPTR_0018s10460g.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000354 Genomic DNA. Translation: EEF03053.1 .
    RefSeqi XP_002324488.1. XM_002324452.2.

    3D structure databases

    ProteinModelPortali B9IM30.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3694.estExt_Genewise1_v1.C_LG_XVIII2895.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi POPTR_0018s10460.1 ; POPTR_0018s10460.1 ; POPTR_0018s10460 .
    GeneIDi 7488994.
    KEGGi pop:POPTR_0018s10460g.

    Phylogenomic databases

    eggNOGi COG2115.
    HOGENOMi HOG000252293.
    KOi K01805.
    OMAi STDVEDM.

    Family and domain databases

    Gene3Di 3.20.20.150. 1 hit.
    HAMAPi MF_00455. Xylose_isom_A.
    InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013452. Xylose_isom_bac.
    IPR001998. Xylose_isomerase.
    [Graphical view ]
    Pfami PF01261. AP_endonuc_2. 1 hit.
    [Graphical view ]
    PRINTSi PR00688. XYLOSISMRASE.
    SUPFAMi SSF51658. SSF51658. 1 hit.
    TIGRFAMsi TIGR02630. xylose_isom_A. 1 hit.
    PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
      Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A.
      , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
      Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. NisquallyImported.

    Entry informationi

    Entry nameiB9IM30_POPTR
    AccessioniPrimary (citable) accession number: B9IM30
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 24, 2009
    Last sequence update: March 24, 2009
    Last modified: October 1, 2014
    This is version 44 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3