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B9IM04 (B9IM04_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Predicted protein EMBL EEF03627.1
Gene names
ORF Names:POPTRDRAFT_809279 EMBL EEF03627.1
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]
Taxonomic identifier3694 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length320 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Cellular componentGolgi apparatus SAAS SAAS002659
Membrane
   DomainTransmembrane
Transmembrane helix SAAS SAAS002659
   Molecular functionGlycosyltransferase SAAS SAAS002659
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processprotein glycosylation

Inferred from electronic annotation. Source: InterPro

   Cellular componentGolgi apparatus

Inferred from electronic annotation. Source: UniProtKB-KW

integral to membrane

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functiongalactosyltransferase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B9IM04 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 6CD0E8AED85F5547

FASTA32037,297
        10         20         30         40         50         60 
MKSTSKPDRH RFILSSLFFI FFLCALATIN GIRFDSLLSF GRCALSNIPS QSSAPSSNNF 

        70         80         90        100        110        120 
LAMNSSTSSD DIRILIGVLT LPDQYQRRHF LRLIYGTQSP VGAQIDVKFV FCNLTKEDQK 

       130        140        150        160        170        180 
VLVALEIMRY DDIIILDCKE NMNKGKTYTY FSSLPEMLND TDKPYPPYHY VMKTDDDTYF 

       190        200        210        220        230        240 
RLDNLVESLK PLPREDLYYG YVIPCPSMDP FVHYMSGMGY MISWDIVEWI RDSEVPKNHL 

       250        260        270        280        290        300 
EGPEDKVFGD WIREGHRAKN RYNAKWSMYN FPEPPTQCTH ELWPNTTAVH LLKNQEKWIQ 

       310        320 
TLKYFNVTSN LKPSKLYHIP

« Hide

References

[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CM000354 Genomic DNA. Translation: EEF03627.1.
RefSeqXP_002325062.1. XM_002325026.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsPOPTR_0018s10190.1; POPTR_0018s10190.1; POPTR_0018s10190.
GeneID7488979.
KEGGpop:POPTR_809279.

Phylogenomic databases

GeneTreeEPGT00050000008816.
OMAPEDKVFG.
PhylomeDBB9IM04.
ProtClustDBCLSN2687421.

Family and domain databases

InterProIPR002659. Glyco_trans_31.
[Graphical view]
PANTHERPTHR11214. Glyco_trans_31. 1 hit.
PfamPF01762. Galactosyl_T. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9IM04_POPTR
AccessionPrimary (citable) accession number: B9IM04
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: December 14, 2011
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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