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B9IFJ0 (B9IFJ0_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 14. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Predicted protein EMBL EEF06421.1
Gene names
ORF Names:POPTRDRAFT_824794 EMBL EEF06421.1
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]
Taxonomic identifier3694 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length441 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processprotein glycosylation

Inferred from electronic annotation. Source: InterPro

   Cellular componentintegral to Golgi membrane

Inferred from electronic annotation. Source: InterPro

   Molecular functionsialyltransferase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B9IFJ0 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 9E7ED700CDC1E74E

FASTA44149,135
        10         20         30         40         50         60 
MRLLQLGFFL ALASGLSALL IYITGVSDLH VSNSLSNQDL EALQSLQNGF KKCVSVNGLG 

        70         80         90        100        110        120 
LQAVTTGSDY CKVTINFPSD TVPKWKDPKT GELEGLWFEF NLCEAVATWE QVRNSTTILT 

       130        140        150        160        170        180 
SEFIDALPNG WEDYAWRRIN KGVLLNQCKN KTLCLEKLSL VLPETPPYVP RQFDRCAVIG 

       190        200        210        220        230        240 
NSGDLLKTKF GKEIDDYDVV IRENGAPIKN YTEYVGKKSS FRLLNRGSAK ALDKVVELDE 

       250        260        270        280        290        300 
TRKEVLMIKT TIHDIMNKMI REVPINNPVY LMLGASFGSA AKGTGLKALE FALSICESVD 

       310        320        330        340        350        360 
MYGFTVDPGY KEWTRYFSES RQGHTPLHGR AYYQMMECLG LIKIHSPMRA DPNRVVHSVP 

       370        380        390        400        410        420 
SQRTITAARI ASEKLLRRVG AGSEDPLRAC SIRKKVAKRK SAAISGLRKA AVDHQNFVKG 

       430        440 
TTMYPLEHHP GHGLLCTLPK D

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References

[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CM000351 Genomic DNA. Translation: EEF06421.1.
RefSeqXP_002322294.1. XM_002322258.1.
UniGenePth.7922.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsPOPTR_0015s11530.1; POPTR_0015s11530.1; POPTR_0015s11530.
GeneID7457569.
KEGGpop:POPTR_824794.

Phylogenomic databases

GeneTreeEPGT00070000031785.
OMAPLHGRAY.
PhylomeDBB9IFJ0.
ProtClustDBCLSN2680364.

Family and domain databases

InterProIPR001675. Glyco_trans_29.
[Graphical view]
PfamPF00777. Glyco_transf_29. 2 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9IFJ0_POPTR
AccessionPrimary (citable) accession number: B9IFJ0
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: December 14, 2011
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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