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B9IDN1 (B9IDN1_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Predicted protein EMBL EEF05518.1
Gene names
ORF Names:POPTRDRAFT_732842 EMBL EEF05518.1
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]
Taxonomic identifier3694 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length353 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 ACB (acyl-CoA-binding) domain. SAAS SAAS014352

Ontologies

Keywords
   DomainANK repeat RuleBase RU003321
Repeat RuleBase RU003536
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular functionfatty-acyl-CoA binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B9IDN1 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 3AD23A013C55222D

FASTA35338,243
        10         20         30         40         50         60 
MADWQHLLQS IFIGLLFSYL LAKLISIVVS FQNDNLHITR NPKPQSNDPD PAPAPAPAVH 

        70         80         90        100        110        120 
HYQHSHGDVD SVVAEQGSVR NESVSGSDGG GDDDDDDWEG VESTELDEMF SAATAFVAAA 

       130        140        150        160        170        180 
AADRVSLKVS SDLQLQLYGY YKIATEGPCT SAPPSALKMT ARAKWQAWQK LGAMPPEDAM 

       190        200        210        220        230        240 
QKYIDIITEL YPTWASGSAM SKDRDGVGPS KDGKGPMGPV FSTFVYEEES GTELKMDAIH 

       250        260        270        280        290        300 
AFAREGEVNN LIKCIDGGVS VNLKDSEGRT PLHWAVDRGH LNIAEVLVGK NADINAKDNE 

       310        320        330        340        350 
GQTPLHYAAV CEREAIAEYL VKQNADTDAK DNDGQSAHDL CESDWPCLQR PAA

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References

[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CM000351 Genomic DNA. Translation: EEF05518.1.
RefSeqXP_002321391.1. XM_002321355.1.
UniGenePth.7794.

3D structure databases

ProteinModelPortalB9IDN1.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsPOPTR_0015s01250.1; POPTR_0015s01250.1; POPTR_0015s01250.
GeneID7475172.
KEGGpop:POPTR_732842.

Phylogenomic databases

GeneTreeEPGT00050000006949.
OMAQLQLYGL.
PhylomeDBB9IDN1.
ProtClustDBCLSN2685520.

Family and domain databases

InterProIPR000582. Acyl-CoA-binding_protein.
IPR002110. Ankyrin_rpt.
IPR020683. Ankyrin_rpt-contain_dom.
IPR014352. FERM/acyl-CoA-bd_prot_3-hlx.
[Graphical view]
Gene3DG3DSA:1.20.80.10. ACBP. 1 hit.
G3DSA:1.25.40.20. ANK. 1 hit.
PfamPF00887. ACBP. 1 hit.
PF12796. Ank_2. 1 hit.
[Graphical view]
PRINTSPR00689. ACOABINDINGP.
PR01415. ANKYRIN.
SMARTSM00248. ANK. 3 hits.
[Graphical view]
SUPFAMSSF47027. ACBP. 1 hit.
SSF48403. ANK. 1 hit.
PROSITEPS51228. ACB_2. 1 hit.
PS50297. ANK_REP_REGION. 1 hit.
PS50088. ANK_REPEAT. 2 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9IDN1_POPTR
AccessionPrimary (citable) accession number: B9IDN1
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: December 14, 2011
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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