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B9IBJ8 (B9IBJ8_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Predicted protein EMBL EEE98312.1
Gene names
ORF Names:POPTRDRAFT_834683 EMBL EEE98312.1
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]
Taxonomic identifier3694 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length625 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functioncarbohydrate binding

Inferred from electronic annotation. Source: InterPro

catalytic activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B9IBJ8 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 90725F01368AEF07

FASTA62571,481
        10         20         30         40         50         60 
MVMDNGLVQV TLSSPGGDIT GIQYNGIHNV LETRNREGNR GYWDVVWNLP VNHIAYDRLK 

        70         80         90        100        110        120 
GTDFNVIMED EDQVELSFKK SWNFTHGGSS APLNVDKRYI MRRGSSGVYL YAILERLEGW 

       130        140        150        160        170        180 
PDMDMDQIRI VFKLQNDKFH FMAISDDRQR IMPMPRDRIS GEPLAYPEAV LLTNPTNPQL 

       190        200        210        220        230        240 
GGEVDDKYHY SCENKDNRVH GWISENPPVG FWMITASDEF RAGGPLKQDL TSHVGPTVLS 

       250        260        270        280        290        300 
MFTSTHYSGK DLNTKYRNGK PWKKVLGPVF VYLNSISSLE DPTTLWEDAK DQMSIEVNSW 

       310        320        330        340        350        360 
PYNFPQSEDF PSSDRRGTVS GQLLVGDKYI SDKPMWASYA YVGLAAPGGV GSWERDAMGY 

       370        380        390        400        410        420 
QFWVQANEEG HFLIENIRAG HYNLYAWVPG IVGDCRYDVI IHIQPGCDVK LGVLVYEPPR 

       430        440        450        460        470        480 
NGPTLWEIGI PDRTAAEFFV PDTYPTLMNK LFINQSTHKF RQYGLWERYS DLYPKHDLIY 

       490        500        510        520        530        540 
TTGISNYHQD WFFAQVPRNM GNHTYQATTW QIKFEIENAT PRTGNYTLQV ALASASASEL 

       550        560        570        580        590        600 
QVRFNDRRAK RPHFRTRLIG RDNAIARHGI HGLYWFYSIN VPSRLLRQGN NTVYLTQSRS 

       610        620 
KSPVGGIMYD YIRLEGPPET GPSVE

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References

[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CM000350 Genomic DNA. Translation: EEE98312.1.
RefSeqXP_002319997.1. XM_002319961.1.
UniGenePth.2564.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7464763.
KEGGpop:POPTR_834683.

Phylogenomic databases

GeneTreeEPGT00050000014513.
OMAFTSTHYS.
ProtClustDBCLSN2926476.

Family and domain databases

InterProIPR013784. Carb-bd-like_fold.
IPR008979. Galactose-bd-like.
IPR011013. Glyco_hydro-type_carb-bd.
IPR010325. Rhamnogal_lyase.
[Graphical view]
PfamPF06045. Rhamnogal_lyase. 1 hit.
[Graphical view]
SUPFAMSSF49452. CBD_4. 1 hit.
SSF49785. Gal_bind_like. 1 hit.
SSF74650. Gal_mut_like. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB9IBJ8_POPTR
AccessionPrimary (citable) accession number: B9IBJ8
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: December 14, 2011
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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