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B9IAF0 (B9IAF0_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Predicted protein EMBL EEE98774.1
Gene names
ORF Names:POPTRDRAFT_572955 EMBL EEE98774.1
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]
Taxonomic identifier3694 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length227 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein L6P family. RuleBase RU003869

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein RuleBase RU003869
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processtranslation

Inferred from electronic annotation. Source: InterPro

   Cellular componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionrRNA binding

Inferred from electronic annotation. Source: InterPro

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B9IAF0 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 9E7822950DAB2C7D

FASTA22725,364
        10         20         30         40         50         60 
MASSSITSSF QTSNLRSVFL GERNRICVPS VPVTRIGFLR KAIECKESRI GKQPIQVPSN 

        70         80         90        100        110        120 
VTIKLEGQDL KVKGPLGELS RTYPREVKLE RDEDGIIRVK KALETRRANQ MHGLFRTLTD 

       130        140        150        160        170        180 
NMVVGVSKGF EKRLQLVGVG YRANVEGKDL VLSLGFSHPV RMAIPATLQV KVEENTRIVV 

       190        200        210        220 
SGFDKCSIGE FAASIRRWRP PEPYKGKGVR YANEIIRLKE GKAGKKK

« Hide

References

[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CM000350 Genomic DNA. Translation: EEE98774.1.
RefSeqXP_002320459.1. XM_002320423.1.
UniGenePth.5493.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGB9IAF0.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsPOPTR_0014s15120.1; POPTR_0014s15120.1; POPTR_0014s15120.
GeneID7462053.
KEGGpop:POPTR_572955.

Phylogenomic databases

GeneTreeEPGT00050000014568.
OMAKRRPEPY.
PhylomeDBB9IAF0.
ProtClustDBCLSN2681987.

Family and domain databases

HAMAPMF_01365_B. Ribosomal_L6_B.
[Tree]
InterProIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019906. Ribosomal_L6_bac-type.
IPR002358. Ribosomal_L6_CS.
[Graphical view]
Gene3DG3DSA:3.90.930.12. Ribosomal_L6. 2 hits.
KOK02933.
PANTHERPTHR11655. Ribosomal_L6. 1 hit.
PfamPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFPIRSF002162. Ribosomal_L6. 1 hit.
PRINTSPR00059. RIBOSOMALL6.
SUPFAMSSF56053. Ribosomal_L6. 2 hits.
TIGRFAMsTIGR03654. L6_bact. 1 hit.
PROSITEPS00525. RIBOSOMAL_L6_1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9IAF0_POPTR
AccessionPrimary (citable) accession number: B9IAF0
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: December 14, 2011
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info