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B9IA78 (B9IA78_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Predicted protein EMBL EEE98744.1
Gene names
ORF Names:POPTRDRAFT_572878 EMBL EEE98744.1
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]
Taxonomic identifier3694 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length474 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processprotein glycosylation

Inferred from electronic annotation. Source: InterPro

   Cellular componentintegral to Golgi membrane

Inferred from electronic annotation. Source: InterPro

   Molecular functionsialyltransferase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B9IA78 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 3BA722C7D9339119

FASTA47453,429
        10         20         30         40         50         60 
MRTLKNKRAS ILQLVCVAAF FSLAVFIIQS SFFTGDNGSS DLNKYFKKEI QILSDFQSSV 

        70         80         90        100        110        120 
KQCVANRGFG LTASIVDHCK LILKFPQGTN STWYNQQFKK FEPLEYNYDV CDAILLWEQY 

       130        140        150        160        170        180 
RNMTTVLTRE YLDTRPDGWL DYAALRIAQL GAKNCSNRAL CEDHLNVILP AKPPFHPRQF 

       190        200        210        220        230        240 
HTCAVVGNSG DLLKTEFGAE IDSHDAVIRD NEAPVNEKYA KHVGLKRDFR LVVRGAAANM 

       250        260        270        280        290        300 
VKILNGSTDE VLIIKSQTHR DFNAMIKLIP NPVYLFQGIV LRRGAKGTGM KTIELALSMC 

       310        320        330        340        350        360 
DIVDIYGFTV DPGYTEWTRY FSTPRKGHNP LQGRAYYQLL ECLGVIRIHS PMRAQRTQDW 

       370        380        390        400        410        420 
SDVPSREMIS RAHAAALRLK RGHVNQAADS GQFGSCKVWG NVDPDNSGPI SGSSDMSDVR 

       430        440        450        460        470 
RNSNYSKWEV MPFGSLRKEA QDHYAQMGGV SLYKMDGNRL DDLVCVRHSL KSEA

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References

[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CM000350 Genomic DNA. Translation: EEE98744.1.
RefSeqXP_002320429.1. XM_002320393.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7466314.
KEGGpop:POPTR_572878.

Phylogenomic databases

GeneTreeEPGT00070000030704.
OMAELALSMC.
ProtClustDBCLSN2690797.

Family and domain databases

InterProIPR001675. Glyco_trans_29.
[Graphical view]
PfamPF00777. Glyco_transf_29. 2 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9IA78_POPTR
AccessionPrimary (citable) accession number: B9IA78
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: December 14, 2011
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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