B9IA36 (B9IA36_POPTR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Predicted protein EMBL EEE98718.1

Gene names

ORF Names:

POPTRDRAFT_572831 EMBL EEE98718.1

Organism

Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]

Taxonomic identifier

3694 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length	684 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	AMP binding Inferred from electronic annotation. Source: InterPro acetate-CoA ligase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B9IA36 [UniParc]. Last modified March 24, 2009. Version 1. Checksum: D9A3609D3B1C962F	FASTA	684	76,159
	10 20 30 40 50 60 MATDNKLRHV TSMLELPSGA GKFSALHAVI LGEALASEEN DLIFPSDDFA RQAHVSSPQQ 70 80 90 100 110 120 YLEMYKRSVE DPAGFWSDIA SQFYWKKKWD QPACSENFDF RKGNISIQWF KGGLTNICYN 130 140 150 160 170 180 CLDRNIESGN ADKIAIYWEG NDPGLEDSLT YSQLLDRVCQ LSNYLKDVGV KKGDAVVIYL 190 200 210 220 230 240 PMLMELPIAM LACARIGAVH SVVFAGFSSE SLAQRIVDCK PKVVITCNAV KRGAKAIHLK 250 260 270 280 290 300 DIVDAALAES AKNGISVDVC LTYENENAMK REGTKWQEGR DVWWQDFVPK YPTTCEVEWV 310 320 330 340 350 360 DAEDPLFLLY TSGSTGKPKG VLHTTGGYMV YSATTFKYAF DYKPSDVYWC TADCGWITGH 370 380 390 400 410 420 SYVTYGPMLN GASVVVFEGT PTYPDAGRCW DIVDKFKVTI FYTAPTLFVT RYSRKSLRVL 430 440 450 460 470 480 GSVGEPINPS AWRWFFNVVG DSRCPISDTW WQTETGGFMI TPLPGAWPQK PGSATFPFFG 490 500 510 520 530 540 VQPVIVDEKG VEIEGECSGY LCLKSSWPGA FRTLYGDHER YETTYFKPFA GYYFTGDGCS 550 560 570 580 590 600 RDKDGYHWLT GRVDDVINVS GHRIGTAEVE SALVSHPKCA EAAVVGVEHE VKGQGIYAFV 610 620 630 640 650 660 TLVEGEPYSE ELRKSLILTV RKQIGAFAAP DKIHWAPGLP KTRSGKIMRR ILRKIASKQL 670 680 DELGDTSTLA EPHVVEQLIE LADC

References

[1]

"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)." Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S. Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nisqually.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000350 Genomic DNA. Translation: EEE98718.1.
RefSeq	XP_002320403.1. XM_002320367.1.
UniGene	Pth.5576.
3D structure databases
ProteinModelPortal	B9IA36.
ModBase	Search...
Protein-protein interaction databases
STRING	B9IA36.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7458000.
KEGG	pop:POPTR_572831.
Phylogenomic databases
GeneTree	EPGT00070000028786.
OMA	DYWWHEE.
ProtClustDB	PLN02654.
Family and domain databases
InterPro	IPR011904. Ac_CoA_lig. IPR024597. Acyl-CoA_synth_DUF3448. IPR020845. AMP-binding_CS. IPR000873. AMP-dep_Synth/Lig. [Graphical view]
KO	K01895.
PANTHER	PTHR24095:SF42. PTHR24095:SF42. 1 hit.
Pfam	PF00501. AMP-binding. 1 hit. PF11930. DUF3448. 1 hit. [Graphical view]
TIGRFAMs	TIGR02188. Ac_CoA_lig_AcsA. 1 hit.
PROSITE	PS00455. AMP_BINDING. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B9IA36_POPTR

Accession

Primary (citable) accession number: B9IA36

Entry history

Integrated into UniProtKB/TrEMBL:	March 24, 2009
Last sequence update:	March 24, 2009
Last modified:	December 14, 2011
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)