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B9I4W8

- B9I4W8_POPTR

UniProt

B9I4W8 - B9I4W8_POPTR

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Protein
Submitted name:

Pyridoxal-dependent decarboxylase family protein

Gene
POPTR_0012s03610g
Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein inferred from homologyi

Functioni

Cofactori

Pyridoxal phosphate By similarity.UniRule annotation

GO - Molecular functioni

  1. glutamate decarboxylase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. glutamate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Pyridoxal-dependent decarboxylase family proteinImported
Gene namesi
ORF Names:POPTR_0012s03610gImported
OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
Taxonomic identifieri3694 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
ProteomesiUP000006729: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

  1. plasmodesma Source: EnsemblPlants/Gramene
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi3694.eugene3.00120058.

Structurei

3D structure databases

ProteinModelPortaliB9I4W8.

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000070228.
KOiK01580.
OMAiMEDEALK.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

Sequencei

Sequence statusi: Complete.

B9I4W8-1 [UniParc]FASTAAdd to Basket

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MVISTAATDS DENLYSTFAS RYVRTALPRF KMPENSMPKD AAYQVINDEL    50
MLDGNPRLNL ASFVTTWMEP ECNDLIMASI NKNYVDMDEY PVTTELQNRC 100
VNIIAHLFNA PVGEKETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK 150
PYDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLTEGYYVM DPVKAVEMVD 200
ENTICVAAIL GSTLTGEFED VKLLNDLLSK KNKETGWNTP IHVDAASGGF 250
IAPFIWPDLE WDFRLPLVKS INVSGHKYGL VYAGVGWVVW RTKEDLPDEL 300
IFHINYLGSD QPTFTLNFSK GSGQIIAQYY QFIRLGFEGY KRIMENCLEN 350
ARVLREGLEK TGRFDIVSKD KGVPLVAFSL KDSSKHTVFE IAESLRRFGW 400
IIPAYTMPAN AQHIAVLRVV VREDFNRSLA ERLVSHIDQV MKETDSLPSR 450
VAVQASRIVT VDETQDNMDG KKTVKKSSRE IQEEVTLYWR RLASEKRTGA 500
C 501
Length:501
Mass (Da):56,652
Last modified:March 24, 2009 - v1
Checksum:i59297368A8512334
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000348 Genomic DNA. Translation: EEE96547.1.
RefSeqiXP_002318327.1. XM_002318291.2.

Genome annotation databases

EnsemblPlantsiPOPTR_0012s03610.1; POPTR_0012s03610.1; POPTR_0012s03610.
GeneIDi7485189.
KEGGipop:POPTR_0012s03610g.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000348 Genomic DNA. Translation: EEE96547.1 .
RefSeqi XP_002318327.1. XM_002318291.2.

3D structure databases

ProteinModelPortali B9I4W8.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3694.eugene3.00120058.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi POPTR_0012s03610.1 ; POPTR_0012s03610.1 ; POPTR_0012s03610 .
GeneIDi 7485189.
KEGGi pop:POPTR_0012s03610g.

Phylogenomic databases

eggNOGi COG0076.
HOGENOMi HOG000070228.
KOi K01580.
OMAi MEDEALK.

Family and domain databases

Gene3Di 3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProi IPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view ]
Pfami PF00282. Pyridoxal_deC. 1 hit.
[Graphical view ]
SUPFAMi SSF53383. SSF53383. 1 hit.
TIGRFAMsi TIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
    Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A.
    , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
    Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nisqually.

Entry informationi

Entry nameiB9I4W8_POPTR
AccessioniPrimary (citable) accession number: B9I4W8
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: September 3, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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