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B9I4W8

- B9I4W8_POPTR

UniProt

B9I4W8 - B9I4W8_POPTR

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Protein

Glutamate decarboxylase

Gene

POPTR_0012s03610g

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

Cofactori

Pyridoxal phosphate.UniRule annotation

GO - Molecular functioni

  1. glutamate decarboxylase activity Source: UniProtKB-EC
  2. pyridoxal phosphate binding Source: EnsemblPlants/Gramene

GO - Biological processi

  1. glutamate metabolic process Source: EnsemblPlants/Gramene
Complete GO annotation...

Keywords - Molecular functioni

DecarboxylaseUniRule annotation, Lyase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
Gene namesi
ORF Names:POPTR_0012s03610gImported
OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
Taxonomic identifieri3694 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
ProteomesiUP000006729: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

  1. plasmodesma Source: EnsemblPlants/Gramene
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi3694.eugene3.00120058.

Structurei

3D structure databases

ProteinModelPortaliB9I4W8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000070228.
InParanoidiB9I4W8.
KOiK01580.
OMAiMEDEALK.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

Sequencei

Sequence statusi: Complete.

B9I4W8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MVISTAATDS DENLYSTFAS RYVRTALPRF KMPENSMPKD AAYQVINDEL
60 70 80 90 100
MLDGNPRLNL ASFVTTWMEP ECNDLIMASI NKNYVDMDEY PVTTELQNRC
110 120 130 140 150
VNIIAHLFNA PVGEKETAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK
160 170 180 190 200
PYDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLTEGYYVM DPVKAVEMVD
210 220 230 240 250
ENTICVAAIL GSTLTGEFED VKLLNDLLSK KNKETGWNTP IHVDAASGGF
260 270 280 290 300
IAPFIWPDLE WDFRLPLVKS INVSGHKYGL VYAGVGWVVW RTKEDLPDEL
310 320 330 340 350
IFHINYLGSD QPTFTLNFSK GSGQIIAQYY QFIRLGFEGY KRIMENCLEN
360 370 380 390 400
ARVLREGLEK TGRFDIVSKD KGVPLVAFSL KDSSKHTVFE IAESLRRFGW
410 420 430 440 450
IIPAYTMPAN AQHIAVLRVV VREDFNRSLA ERLVSHIDQV MKETDSLPSR
460 470 480 490 500
VAVQASRIVT VDETQDNMDG KKTVKKSSRE IQEEVTLYWR RLASEKRTGA

C
Length:501
Mass (Da):56,652
Last modified:March 24, 2009 - v1
Checksum:i59297368A8512334
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000348 Genomic DNA. Translation: EEE96547.1.
RefSeqiXP_002318327.1. XM_002318291.2.

Genome annotation databases

EnsemblPlantsiPOPTR_0012s03610.1; POPTR_0012s03610.1; POPTR_0012s03610.
GeneIDi7485189.
KEGGipop:POPTR_0012s03610g.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000348 Genomic DNA. Translation: EEE96547.1 .
RefSeqi XP_002318327.1. XM_002318291.2.

3D structure databases

ProteinModelPortali B9I4W8.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3694.eugene3.00120058.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi POPTR_0012s03610.1 ; POPTR_0012s03610.1 ; POPTR_0012s03610 .
GeneIDi 7485189.
KEGGi pop:POPTR_0012s03610g.

Phylogenomic databases

eggNOGi COG0076.
HOGENOMi HOG000070228.
InParanoidi B9I4W8.
KOi K01580.
OMAi MEDEALK.

Family and domain databases

Gene3Di 3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProi IPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view ]
Pfami PF00282. Pyridoxal_deC. 1 hit.
[Graphical view ]
SUPFAMi SSF53383. SSF53383. 1 hit.
TIGRFAMsi TIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
    Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A.
    , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
    Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NisquallyImported.

Entry informationi

Entry nameiB9I4W8_POPTR
AccessioniPrimary (citable) accession number: B9I4W8
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: October 29, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3