Skip Header

Contribute Send feedback
Read comments (?) or add your own

B9I3I7 (B9I3I7_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
Predicted protein EMBL EEE96312.1
Gene names
ORF Names:POPTRDRAFT_662072 EMBL EEE96312.1
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]
Taxonomic identifier3694 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length442 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   DomainZinc-finger RuleBase RU000353
   LigandMetal-binding
Zinc
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular functionzinc ion binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B9I3I7 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 45A75A399AD72690

FASTA44249,220
        10         20         30         40         50         60 
MPWKLTLVKM GGILSRRSSS RHPSSSHSWS HHSYPQSPYA QPSQEYMQYQ HYVPPPQSYG 

        70         80         90        100        110        120 
DPAPNSRRLE RKYSKIDDNY NSLVQVTEAL ARAGLESSNL IVGIDFTKSN EWTGARSFSH 

       130        140        150        160        170        180 
RSLHHIGDDQ NPYEQAIYII GKTLSSFDED NLIPCFGFGD ASTHDQEVFS FYPDERFCNG 

       190        200        210        220        230        240 
FEEVLRRYRE LVPCLRLAGP TSFAPVIEMA ITIVEQSGGQ YHVLLIIADG QVTRSVDTEH 

       250        260        270        280        290        300 
GHLSPQEKRT VEAIVKASEY PLSIILVGVG DGPWDMMKEF DDNIPARAFD NFQFVNFTEI 

       310        320        330        340        350        360 
MSKNMDRPRK EAEFSLAALM EIPSQYKATL ELNIMGATKG KAIDRVPLPP PQYGAGSTSF 

       370        380        390        400        410        420 
RNPKPAQSSN SRPSASSSGR HDVVGTALPA SSASDNHLCP ICLTDPKDMA FGCGHQTCCD 

       430        440 
CGQDLQSCPI CRSTIHTRIK LY

« Hide

References

[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CM000348 Genomic DNA. Translation: EEE96312.1.
RefSeqXP_002318092.1. XM_002318056.1.
UniGenePth.1417.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7484434.
KEGGpop:POPTR_662072.

Phylogenomic databases

GeneTreeEPGT00070000028159.
OMARKYSKID.
ProtClustDBCLSN2719345.

Family and domain databases

InterProIPR010734. Copine.
IPR002035. VWF_A.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
Gene3DG3DSA:3.30.40.10. Znf_RING/FYVE/PHD. 1 hit.
PfamPF07002. Copine. 1 hit.
[Graphical view]
SMARTSM00184. RING. 1 hit.
SM00327. VWA. 1 hit.
[Graphical view]
PROSITEPS50089. ZF_RING_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9I3I7_POPTR
AccessionPrimary (citable) accession number: B9I3I7
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: December 14, 2011
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info