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Unreviewed, UniProtKB/TrEMBL B9HZV4 (B9HZV4_POPTR)

Last modified March 2, 2010. Version 10. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · Ontologies · Sequences · References · Cross-references · Entry information

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Names and origin

Protein namesSubmitted name:
Predicted protein EMBL EEE97512.1
Gene names
ORF Names:POPTRDRAFT_771827 EMBL EEE97512.1
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) EMBL EEE97512.1
Taxonomic identifier3694 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

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Protein attributes

Sequence length293 AA.
Sequence statusComplete.
Protein existenceInferred from homology.

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Sequences

Sequence LengthMass (Da)Tools
B9HZV4-1 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 60778FAC46768507

FASTA29332,412
        10         20         30         40         50         60 
MSMCSSCSSG SSSTRSWIVH GIVAGAAIAA AIGAGAYLVR YRKFRSQVVG IIPARYASSR 

        70         80         90        100        110        120 
FEGKPLVNIL GKPMIQRTWE RAKLATTLDH IVVATDDEKI AECCRGFGAD VVMTSESCRN 

       130        140        150        160        170        180 
GTERCNEALQ KLDKKYDVVV NIQGDEPLIE PEIIDGIVKS LQAAPDAVFS TAVTSLKPED 

       190        200        210        220        230        240 
AFDPNRVKCV VDNQGYAIYF SRGLIPYNKS GKVNPQFPYL LHLGIQSYDA KFLKIYPELQ 

       250        260        270        280        290 
PTPLQLEEDL EQLKVLENGY KMKVIKVDHE AHGVDIPEDV EKIETLMREQ NLS

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References

[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[2]US DOE Joint Genome Institute (JGI-PGF)
Grigoriev I.V., Terry A., Salamov A.A., Otillar R., Lou Y., Lucas S., Hammon N., Glavina del Rio T., Detter J., Kalin E., Tice H., Pitluck S., Chapman J., Putnam N.H., Brunner A., Busov V., Campbell M., Chalot M. expand/collapse author list , Covert S., Davis J., DiFazio S., Gribskov M., Gunter L., Hamberger B., Jansson S., Joshi C., Larimer F., Martin F., Napoli C., Nelson D., Ralph S., Rombauts S., Rouze P., Schrader J., Tsai C., Vahala J., Tuskan G., Rokhsar D.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.

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Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CM000347 Genomic DNA. Translation: EEE97512.1.
RefSeqXP_002316900.1.

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID7462336.
KEGGpop:POPTR_771827.

Phylogenomic databases

OMATDRINEA.
ProtClustDBPLN02917.

Family and domain databases

HAMAPMF_00057. CMP-KDO_synth.
[Tree]
InterProIPR003329. Cytidylyl_trans.
IPR004528. KdsB.
[Graphical view]
PfamPF02348. CTP_transf_3. 1 hit.
[Graphical view]
TIGRFAMsTIGR00466. kdsB. 1 hit.
ProtoNetSearch...

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Entry information

Entry nameB9HZV4_POPTR
AccessionPrimary (citable) accession number: B9HZV4
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: March 2, 2010
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · Ontologies · Sequences · References · Cross-references · Entry information