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B9HYR1

- B9HYR1_POPTR

UniProt

B9HYR1 - B9HYR1_POPTR

Protein
Submitted name:

Uncharacterized protein

Gene

POPTR_0011s03780g

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 32 (01 Oct 2014)
      Sequence version 2 (11 Dec 2013)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    ORF Names:POPTR_0011s03780gImported
    OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
    Taxonomic identifieri3694 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
    ProteomesiUP000006729: Unassembled WGS sequence

    Family & Domainsi

    Sequence similaritiesi

    Contains 1 F-box domain.UniRule annotation

    Phylogenomic databases

    eggNOGiNOG303496.
    OMAiNINGALH.

    Family and domain databases

    InterProiIPR006527. F-box-assoc_dom_typ1.
    IPR017451. F-box-assoc_interact_dom.
    IPR001810. F-box_dom.
    IPR011043. Gal_Oxase/kelch_b-propeller.
    [Graphical view]
    PfamiPF00646. F-box. 1 hit.
    PF07734. FBA_1. 1 hit.
    [Graphical view]
    SMARTiSM00256. FBOX. 1 hit.
    [Graphical view]
    SUPFAMiSSF50965. SSF50965. 1 hit.
    SSF81383. SSF81383. 1 hit.
    TIGRFAMsiTIGR01640. F_box_assoc_1. 1 hit.
    PROSITEiPS50181. FBOX. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B9HYR1-1 [UniParc]FASTAAdd to Basket

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    MKSHRGRRSR AKNGGNQVQD AEWSMSALPD DITADILLQL PLKSKIQCRC    50
    VCRTWRNLLS DSYFSEVQRE RAQSMLVLRS PPSCVSRKAA ALAPNDFYVV 100
    DLESGSVRNN VMKLNTKNNL PTCHVELVGS CNGLLCLFDK NSKKVFYLCN 150
    PVTGEHVRTP ANCKKEKQRG QTILDAVLGF GFSPKSNHYM VLRITRKKLT 200
    YPISILRSEG EICIFGDNEW KSIGEIPFPD CKKFFGVSLN GALHWILNLD 250
    DYEDADLICA LDIDSKKIRP MSPPNGFRRD TTEMTLGVLR DCLFICDSMT 300
    LYNLDIWVMK EYGVKDSWTK EIVIAKTSLP SNLQNSFLQP IMVSKDGEVL 350
    ISSDSNVFVW YDPGSKSFTK NKIFINVSSL 380
    Length:380
    Mass (Da):42,935
    Last modified:December 11, 2013 - v2
    Checksum:i3432FD3C7A88D9D9
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000347 Genomic DNA. Translation: EEE97873.2.
    RefSeqiXP_002317261.2. XM_002317225.2.

    Genome annotation databases

    GeneIDi7497014.
    KEGGipop:POPTR_0011s03780g.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000347 Genomic DNA. Translation: EEE97873.2 .
    RefSeqi XP_002317261.2. XM_002317225.2.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 7497014.
    KEGGi pop:POPTR_0011s03780g.

    Phylogenomic databases

    eggNOGi NOG303496.
    OMAi NINGALH.

    Family and domain databases

    InterProi IPR006527. F-box-assoc_dom_typ1.
    IPR017451. F-box-assoc_interact_dom.
    IPR001810. F-box_dom.
    IPR011043. Gal_Oxase/kelch_b-propeller.
    [Graphical view ]
    Pfami PF00646. F-box. 1 hit.
    PF07734. FBA_1. 1 hit.
    [Graphical view ]
    SMARTi SM00256. FBOX. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50965. SSF50965. 1 hit.
    SSF81383. SSF81383. 1 hit.
    TIGRFAMsi TIGR01640. F_box_assoc_1. 1 hit.
    PROSITEi PS50181. FBOX. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
      Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A.
      , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
      Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. NisquallyImported.

    Entry informationi

    Entry nameiB9HYR1_POPTR
    AccessioniPrimary (citable) accession number: B9HYR1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 24, 2009
    Last sequence update: December 11, 2013
    Last modified: October 1, 2014
    This is version 32 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3