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B9HYR1

- B9HYR1_POPTR

UniProt

B9HYR1 - B9HYR1_POPTR

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Protein
Submitted name:

Uncharacterized protein

Gene

POPTR_0011s03780g

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:POPTR_0011s03780gImported
OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
Taxonomic identifieri3694 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
ProteomesiUP000006729: Unassembled WGS sequence

Family & Domainsi

Sequence similaritiesi

Contains 1 F-box domain.UniRule annotation
Contains F-box domain.SAAS annotation

Phylogenomic databases

eggNOGiNOG303496.
InParanoidiB9HYR1.
OMAiNINGALH.

Family and domain databases

InterProiIPR006527. F-box-assoc_dom_typ1.
IPR017451. F-box-assoc_interact_dom.
IPR001810. F-box_dom.
IPR011043. Gal_Oxase/kelch_b-propeller.
[Graphical view]
PfamiPF00646. F-box. 1 hit.
PF07734. FBA_1. 1 hit.
[Graphical view]
SMARTiSM00256. FBOX. 1 hit.
[Graphical view]
SUPFAMiSSF50965. SSF50965. 1 hit.
SSF81383. SSF81383. 1 hit.
TIGRFAMsiTIGR01640. F_box_assoc_1. 1 hit.
PROSITEiPS50181. FBOX. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B9HYR1-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MKSHRGRRSR AKNGGNQVQD AEWSMSALPD DITADILLQL PLKSKIQCRC
60 70 80 90 100
VCRTWRNLLS DSYFSEVQRE RAQSMLVLRS PPSCVSRKAA ALAPNDFYVV
110 120 130 140 150
DLESGSVRNN VMKLNTKNNL PTCHVELVGS CNGLLCLFDK NSKKVFYLCN
160 170 180 190 200
PVTGEHVRTP ANCKKEKQRG QTILDAVLGF GFSPKSNHYM VLRITRKKLT
210 220 230 240 250
YPISILRSEG EICIFGDNEW KSIGEIPFPD CKKFFGVSLN GALHWILNLD
260 270 280 290 300
DYEDADLICA LDIDSKKIRP MSPPNGFRRD TTEMTLGVLR DCLFICDSMT
310 320 330 340 350
LYNLDIWVMK EYGVKDSWTK EIVIAKTSLP SNLQNSFLQP IMVSKDGEVL
360 370 380
ISSDSNVFVW YDPGSKSFTK NKIFINVSSL
Length:380
Mass (Da):42,935
Last modified:December 11, 2013 - v2
Checksum:i3432FD3C7A88D9D9
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000347 Genomic DNA. Translation: EEE97873.2.
RefSeqiXP_002317261.2. XM_002317225.2.

Genome annotation databases

GeneIDi7497014.
KEGGipop:POPTR_0011s03780g.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000347 Genomic DNA. Translation: EEE97873.2 .
RefSeqi XP_002317261.2. XM_002317225.2.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 7497014.
KEGGi pop:POPTR_0011s03780g.

Phylogenomic databases

eggNOGi NOG303496.
InParanoidi B9HYR1.
OMAi NINGALH.

Family and domain databases

InterProi IPR006527. F-box-assoc_dom_typ1.
IPR017451. F-box-assoc_interact_dom.
IPR001810. F-box_dom.
IPR011043. Gal_Oxase/kelch_b-propeller.
[Graphical view ]
Pfami PF00646. F-box. 1 hit.
PF07734. FBA_1. 1 hit.
[Graphical view ]
SMARTi SM00256. FBOX. 1 hit.
[Graphical view ]
SUPFAMi SSF50965. SSF50965. 1 hit.
SSF81383. SSF81383. 1 hit.
TIGRFAMsi TIGR01640. F_box_assoc_1. 1 hit.
PROSITEi PS50181. FBOX. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
    Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A.
    , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
    Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NisquallyImported.

Entry informationi

Entry nameiB9HYR1_POPTR
AccessioniPrimary (citable) accession number: B9HYR1
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: December 11, 2013
Last modified: October 29, 2014
This is version 33 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3