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Protein
Submitted name:

Uncharacterized protein

Gene

POPTR_0011s03780g

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:POPTR_0011s03780gImported
OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
Taxonomic identifieri3694 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
Proteomesi
  • UP000006729 Componenti: Linkage group LGXI

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini22 – 6746F-boxInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 F-box domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG410JDJ5. Eukaryota.
ENOG410ZS8K. LUCA.
InParanoidiB9HYR1.
OMAiIQCRCVC.

Family and domain databases

InterProiIPR006527. F-box-assoc_dom_typ1.
IPR017451. F-box-assoc_interact_dom.
IPR001810. F-box_dom.
IPR011043. Gal_Oxase/kelch_b-propeller.
[Graphical view]
PfamiPF00646. F-box. 1 hit.
PF07734. FBA_1. 1 hit.
[Graphical view]
SMARTiSM00256. FBOX. 1 hit.
[Graphical view]
SUPFAMiSSF50965. SSF50965. 1 hit.
SSF81383. SSF81383. 1 hit.
TIGRFAMsiTIGR01640. F_box_assoc_1. 1 hit.
PROSITEiPS50181. FBOX. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B9HYR1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKSHRGRRSR AKNGGNQVQD AEWSMSALPD DITADILLQL PLKSKIQCRC
60 70 80 90 100
VCRTWRNLLS DSYFSEVQRE RAQSMLVLRS PPSCVSRKAA ALAPNDFYVV
110 120 130 140 150
DLESGSVRNN VMKLNTKNNL PTCHVELVGS CNGLLCLFDK NSKKVFYLCN
160 170 180 190 200
PVTGEHVRTP ANCKKEKQRG QTILDAVLGF GFSPKSNHYM VLRITRKKLT
210 220 230 240 250
YPISILRSEG EICIFGDNEW KSIGEIPFPD CKKFFGVSLN GALHWILNLD
260 270 280 290 300
DYEDADLICA LDIDSKKIRP MSPPNGFRRD TTEMTLGVLR DCLFICDSMT
310 320 330 340 350
LYNLDIWVMK EYGVKDSWTK EIVIAKTSLP SNLQNSFLQP IMVSKDGEVL
360 370 380
ISSDSNVFVW YDPGSKSFTK NKIFINVSSL
Length:380
Mass (Da):42,935
Last modified:December 11, 2013 - v2
Checksum:i3432FD3C7A88D9D9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000347 Genomic DNA. Translation: EEE97873.2.
RefSeqiXP_002317261.2. XM_002317225.2.

Genome annotation databases

EnsemblPlantsiPOPTR_0011s03780.1; POPTR_0011s03780.1; POPTR_0011s03780.
GeneIDi7497014.
GrameneiPOPTR_0011s03780.1; POPTR_0011s03780.1; POPTR_0011s03780.
KEGGipop:POPTR_0011s03780g.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000347 Genomic DNA. Translation: EEE97873.2.
RefSeqiXP_002317261.2. XM_002317225.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiPOPTR_0011s03780.1; POPTR_0011s03780.1; POPTR_0011s03780.
GeneIDi7497014.
GrameneiPOPTR_0011s03780.1; POPTR_0011s03780.1; POPTR_0011s03780.
KEGGipop:POPTR_0011s03780g.

Phylogenomic databases

eggNOGiENOG410JDJ5. Eukaryota.
ENOG410ZS8K. LUCA.
InParanoidiB9HYR1.
OMAiIQCRCVC.

Family and domain databases

InterProiIPR006527. F-box-assoc_dom_typ1.
IPR017451. F-box-assoc_interact_dom.
IPR001810. F-box_dom.
IPR011043. Gal_Oxase/kelch_b-propeller.
[Graphical view]
PfamiPF00646. F-box. 1 hit.
PF07734. FBA_1. 1 hit.
[Graphical view]
SMARTiSM00256. FBOX. 1 hit.
[Graphical view]
SUPFAMiSSF50965. SSF50965. 1 hit.
SSF81383. SSF81383. 1 hit.
TIGRFAMsiTIGR01640. F_box_assoc_1. 1 hit.
PROSITEiPS50181. FBOX. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
    Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A.
    , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
    Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NisquallyImported.

Entry informationi

Entry nameiB9HYR1_POPTR
AccessioniPrimary (citable) accession number: B9HYR1
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: December 11, 2013
Last modified: June 8, 2016
This is version 41 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.