B9HYN6 (B9HYN6_POPTR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Predicted protein EMBL EEE97861.1

Gene names

ORF Names:

POPTRDRAFT_771192 EMBL EEE97861.1

Organism

Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]

Taxonomic identifier

3694 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length	893 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Domain	Zinc-finger RuleBase RU000353
Ligand	Metal-binding Zinc
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B9HYN6 [UniParc]. Last modified March 24, 2009. Version 1. Checksum: 8F946D0F49445C88	FASTA	893	101,855
	10 20 30 40 50 60 MEALPDHLRC KRTDGRQWRC NRRVMEDKKL CEIHHLQGRH RQYRRKVPEN LKLQRKKSKK 70 80 90 100 110 120 SATSSSNAET LIRVSSKEGK LGKFKKKGKK LKRGDLQLDL IRMVLQKEME KRKSKKRKSF 130 140 150 160 170 180 SEKSEEGEGE ELMRNLPNGF MAISPAKSFG NGNVGCSSSH CDIKIGGDVF NGASTARRCF 190 200 210 220 230 240 RSKNVEPMPI GKLQVLPYKR DGVRLRKGKR KKCHWCRSST RTLIRCSSCR KEYYCLDCIK 250 260 270 280 290 300 EQYLETQEEV RRECPMCRGT CSCKVCSAIQ CRDIACKDLS KEKSEVDNVL HFHYLICMLL 310 320 330 340 350 360 PILKQINQDQ SIELEIEAKI KGQKPSEVQI QQAEVSCNKQ CCCNNCKTSI VDFHRSCPEC 370 380 390 400 410 420 SYNLCLSCCR DIFHGGVHGG VKTLLCKCPN GRKACCGGSL LDLSCIFPLC WTKDLEVNAE 430 440 450 460 470 480 ELVGCYELPE TLDVRSCCSL CVGMDCESNG IEQLQEAAAR EDSGDNLLYY PTIIDVRSDN 490 500 510 520 530 540 LEHFQKHWGR GQPVIVRNVL QSTSDLSWDP IVMFCNYLKN NAARSQNGQA TDCSDWFEVE 550 560 570 580 590 600 IGIRQMFMGS FKGLTNANIW HEKLKLKGLL SSYLFQEHFP VHYSHVLQAL PLPEYMDPIS 610 620 630 640 650 660 GVLNIAADLG QETSKSDLGP CLYISYGSGE NLSQADSVTK LRYNSYDVVN ILAHATDVPV 670 680 690 700 710 720 STKQLNYIRK EDMQVNKKVA RVSWFSAARH ETHASNLKDR DVFHDGDSGS DSDSDSDSHT 730 740 750 760 770 780 DTDTEFHGNH SETSNHFISE SCGAQWDVFR KQDVPKLVEY LRRHSNEFTH TYGFQKHMVH 790 800 810 820 830 840 PILDQNFFLD AYHKMRLKEE FKIEPWSFDQ HVGEAVIVPA GCPYQIRNLK SCVSVVLDFL 850 860 870 880 890 SPENVTECIQ LMDELRQLPE NHKAKVDSLE VKKMALHSIS RAVRKIHELT RAE

References

[1]

"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)." Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S. Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nisqually.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000347 Genomic DNA. Translation: EEE97861.1.
RefSeq	XP_002317249.1. XM_002317213.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7496997.
KEGG	pop:POPTR_771192.
Phylogenomic databases
GeneTree	EPGT00050000003337.
OMA	LDLIRMV.
ProtClustDB	CLSN2719050.
Family and domain databases
InterPro	IPR013129. TF_JmjC. IPR003347. TF_JmjC_AAH. IPR014977. WRC. IPR001841. Znf_RING. [Graphical view]
Pfam	PF02373. JmjC. 1 hit. PF08879. WRC. 1 hit. [Graphical view]
SMART	SM00558. JmjC. 1 hit. SM00184. RING. 1 hit. [Graphical view]
PROSITE	PS51184. JMJC. 1 hit. PS50089. ZF_RING_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B9HYN6_POPTR

Accession

Primary (citable) accession number: B9HYN6

Entry history

Integrated into UniProtKB/TrEMBL:	March 24, 2009
Last sequence update:	March 24, 2009
Last modified:	December 14, 2011
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)