B9HVG1 (B9HVG1_POPTR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Predicted protein EMBL EEF01573.1

Gene names

ORF Names:

POPTRDRAFT_805680 EMBL EEF01573.1

Organism

Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]

Taxonomic identifier

3694 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length	932 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA topological change Inferred from electronic annotation. Source: InterPro regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Cellular component	chromosome Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: InterPro DNA topoisomerase (ATP-hydrolyzing) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B9HVG1 [UniParc]. Last modified March 24, 2009. Version 1. Checksum: 8FE389B824614092	FASTA	932	102,794
	10 20 30 40 50 60 MSLPSTLRLS SLLHRLPPPS RRYFSFLHHR SVSDLRFSSS SPRIRPVVQS RRREEPATDD 70 80 90 100 110 120 SENGSLLVKD PNGGSPGGGN GRVVQTELHK EATEAYMAYA MSVLLGRALP DVRDGLKPVH 130 140 150 160 170 180 RRILFAMHEL GLSSKKPFKK CARVVGEVLG KFHPHGDTAV YDALVRMAQD FSLRCPLIQG 190 200 210 220 230 240 HGNFGSVDAD PPAAMRYTEC RLDGLTEAVF LADLEQDTVD FVPNFDNSQK EPSLFPTRLP 250 260 270 280 290 300 TLLLNGSSGI AVGMATKIPP HNLGELVDVL CALIHNPEAT LQELLEYMPG PDFPTGGIIM 310 320 330 340 350 360 GNQGILDAYR SGQGRIVVRG KTDVELLDSK TKRNAVIIKE IPYQTNKASL VEKIAELVED 370 380 390 400 410 420 KNLDGISDIR DESDRSGMRI VIELKRGADP SIVLNNLYRL TPLQSSFSCN MVGILDGQPK 430 440 450 460 470 480 QMGLKELLQA FLDFRCSVVE RRAMFKLSEA QKRRHIVEGV MAGLDNLDRV VDIIRKASSN 490 500 510 520 530 540 AIASADLRNE FSLSEKQAEA ILDISLRRLT LLEGKKFVEE SKSLMEQITK LEELLSSRGN 550 560 570 580 590 600 ILQLIEQEAV ELKNKFSNPR RSMLEDSDSG QLEDIDVIPN EEMLLAISEK GYVKRMKPNT 610 620 630 640 650 660 FNLQNRGTIG KSVGKLRDSD AMSDFIVCHA HDRVLYFSDQ GIVYSAPAYK IPECTRAAAG 670 680 690 700 710 720 TPLIQFLSLS DGERITSIIP VSEFVEDQFL LMLTVNGYIK KVSLNSFSAI RSTGIIAIQL 730 740 750 760 770 780 VPGDELKWVR CCTNGDLVAM ASQNGMVILT SCENIRALGR NTRGGVAMRL REGDKIASMD 790 800 810 820 830 840 IIPASLQKDL EVASKDSENN NKGTGPWLLF VSESGHGKRV PLSSFKQSRL NRVGLIGYKF 850 860 870 880 890 900 FEEDHLAAVF AVGFSLTEDG ESDEQVVLVS QSGTVNRIKV RDISIQSRFA RGVILMRLEH 910 920 930 AGKIQSTSLI SAADPELEEL APVPELLSEA SL

References

[1]

"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)." Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S. Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nisqually.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000346 Genomic DNA. Translation: EEF01573.1.
RefSeq	XP_002315402.1. XM_002315366.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	B9HVG1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7491584.
KEGG	pop:POPTR_805680.
Phylogenomic databases
GeneTree	EPGT00050000011297.
OMA	TSIPPHR.
ProtClustDB	CLSN2690844.
Family and domain databases
InterPro	IPR005743. GyrA. IPR006691. GyrA/parC_pinwhl. IPR002205. Topo_IIA_A/C. IPR013758. Topo_IIA_A/C_ab. IPR013760. Topo_IIA_cen. [Graphical view]
Gene3D	G3DSA:3.90.199.10. Topo_IIA_A/C_ab. 2 hits.
KO	K02469.
Pfam	PF03989. DNA_gyraseA_C. 6 hits. PF00521. DNA_topoisoIV. 1 hit. [Graphical view]
SMART	SM00434. TOP4c. 1 hit. [Graphical view]
SUPFAM	SSF56719. Topo_IIA_cen. 1 hit.
TIGRFAMs	TIGR01063. GyrA. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B9HVG1_POPTR

Accession

Primary (citable) accession number: B9HVG1

Entry history

Integrated into UniProtKB/TrEMBL:	March 24, 2009
Last sequence update:	March 24, 2009
Last modified:	January 25, 2012
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)