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B9HU09 (B9HU09_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
AP2 domain-containing transcription factor EMBL EEF01440.1
Gene names
Name:RAP4 EMBL EEF01440.1
ORF Names:POPTRDRAFT_770475 EMBL EEF01440.1
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]
Taxonomic identifier3694 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length487 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Biological processTranscription
Transcription regulation SAAS SAAS016177
   Cellular componentNucleus SAAS SAAS016177
   LigandDNA-binding SAAS SAAS016177
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processtranscription, DNA-dependent

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular componentnucleus

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionDNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

sequence-specific DNA binding transcription factor activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B9HU09 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: B45CB9AA6A986F4A

FASTA48753,592
        10         20         30         40         50         60 
MLDLNLGISS SDSCCEDNNK NNMMVIVDVE NHQEEEEAAS RTQQMEDSAT SNSSITNTTE 

        70         80         90        100        110        120 
DENSSNNSNS AFIFDILKKD GNFTNTSAIN ASKETSRNCD FTTQQLFPES TGLELNFQPG 

       130        140        150        160        170        180 
LAVASAARPQ WLKLSQMGSS PEAEPENVQQ KQQQARKSRR GPRSRSSQYR GVTFYRRTGR 

       190        200        210        220        230        240 
WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVDAD INFNSSDYEE DMKQMKNLSK 

       250        260        270        280        290        300 
EEFVHILRRQ STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKAYDKAAL EFNGREAVTN 

       310        320        330        340        350        360 
FEPSVYKGDV ISDPNNGGSG HNLDLSLGIS QPSNDPKGND SVGDSHCRYG GCEIPRKERQ 

       370        380        390        400        410        420 
VVEGSTAAAH MGLQTLHGSP MASKNLPAWS GIYPGLLSSY EERTTEKKVE AVSSPRFSSW 

       430        440        450        460        470        480 
PWLINGSNNV VATMSQLSVA ASSGFSSTIT ASSATLPFNQ QNHFASNLRL AASTTSSPNP 


SLYSYKR

« Hide

References

[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CM000346 Genomic DNA. Translation: EEF01440.1.
RefSeqXP_002315269.1. XM_002315233.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsPOPTR_0010s22320.1; POPTR_0010s22320.1; POPTR_0010s22320.
GeneID7489618.
KEGGpop:POPTR_770475.

Phylogenomic databases

GeneTreeEPGT00070000028338.
PhylomeDBB9HU09.
ProtClustDBCLSN2717682.

Family and domain databases

InterProIPR016177. DNA-bd_integrase-typ.
IPR001471. TF_ERF_DNA-bd.
[Graphical view]
Gene3DG3DSA:3.30.730.10. TF_ERF. 1 hit.
PfamPF00847. AP2. 1 hit.
[Graphical view]
SMARTSM00380. AP2. 2 hits.
[Graphical view]
SUPFAMSSF54171. DNA-binding_integrase-type. 2 hits.
PROSITEPS51032. AP2_ERF. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9HU09_POPTR
AccessionPrimary (citable) accession number: B9HU09
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: December 14, 2011
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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