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B9HRR0 (B9HRR0_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Predicted protein EMBL EEE87016.1
Gene names
ORF Names:POPTRDRAFT_649449 EMBL EEE87016.1
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]
Taxonomic identifier3694 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length435 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular componentendoplasmic reticulum

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B9HRR0 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: C1C5150DDC4E1FE0

FASTA43548,976
        10         20         30         40         50         60 
MIGRRDGALM RNNSSNQSLL KSRIAIAIAI GMFLGCIFAF FFPHGLFSSN SPHFDHNHLT 

        70         80         90        100        110        120 
RSISQVVSTS CESSDSLNML KAEFVAASEK NAELKKQVNV LIEKLRLAEQ GKDHAEKQVL 

       130        140        150        160        170        180 
VLGEPHKAGP FGTVQGLRTN PTVVPDDSVN PRLANILEKI AVGKELIVAL ANSNVKDMLE 

       190        200        210        220        230        240 
VWFKSIQKVG IPNYLVVALD DEIAKFCESN DVPVYKRDPD KGIDSVGKTG GNHAVSGLKF 

       250        260        270        280        290        300 
HILREFLQLG YSVLLSDVDI VYLQNPFHYL YRDSDVESMS DGHNNMTAYG YNDVFDEPAM 

       310        320        330        340        350        360 
GWARYAHTMR IWVYNSGFFY IRPTIPSIEL LDRVANRLSR GNAWDQAVFN EELFFPSHPG 

       370        380        390        400        410        420 
YDGLYASRRT MDFYLFMNSK VLFKTVRKNA NLRKIKPVIV HINYHPDKLP RMQAVVEFYV 

       430 
NGKQDALSSF PDGSE

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References

[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CM000345 Genomic DNA. Translation: EEE87016.1.
RefSeqXP_002313061.1. XM_002313025.1.
UniGenePth.11757.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsPOPTR_0009s11620.1; POPTR_0009s11620.1; POPTR_0009s11620.
GeneID7456389.
KEGGpop:POPTR_649449.

Phylogenomic databases

GeneTreeEPGT00050000010769.
OMASCESSER.
PhylomeDBB9HRR0.
ProtClustDBCLSN2682481.

Family and domain databases

InterProIPR005069. Nucl-diP-sugar_transferase.
IPR003388. Reticulon.
[Graphical view]
PANTHERPTHR10994. Reticulon. 1 hit.
PfamPF03407. Nucleotid_trans. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9HRR0_POPTR
AccessionPrimary (citable) accession number: B9HRR0
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: December 14, 2011
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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