B9HQC5 (B9HQC5_POPTR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Predicted protein EMBL EEE88242.1

Gene names

ORF Names:

POPTRDRAFT_204417 EMBL EEE88242.1

Organism

Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Reference proteome]

Taxonomic identifier

3694 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length	688 AA.
Sequence status	Fragment.
Protein existence	Predicted

Ontologies

Keywords
Domain	Zinc-finger RuleBase RU000353
Ligand	Metal-binding Zinc
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Molecular_function	zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	688	1	EMBL EEE88242.1

Sequences

	Sequence		Length	Mass (Da)
	B9HQC5 [UniParc]. Last modified March 24, 2009. Version 1. Checksum: AB406F9389123FB7	FASTA	688	74,930
	10 20 30 40 50 60 MGSKWRKAKL ALGLNMCLYV PPTDVEQRDS SSSPSPARLF SRSSHGSTTP TPSSSGLRLS 70 80 90 100 110 120 TSPDSNNKRT CAICLTAMKT GQGQAIFMAE CSHSFHFHCI ASNVKHGNQI CPVCRAKWKE 130 140 150 160 170 180 IPFQRSVSDV TCGKPRMSAL GWPQDDAWMT VLRRLPPART DANRHISSHY QANEPAIFDD 190 200 210 220 230 240 DEDLDPQHET AEGNTSTQDA GDVNSVRTVE VFTYTEVSAV PKSVSYDNFT ILIHLKAPLT 250 260 270 280 290 300 SGRQNRNWNH AESPQSSQDS RAPVDLVTVL DVSGSMSGTK LALLKRAMGF VIQNLGPSDR 310 320 330 340 350 360 LSVIAFSSTA RRHFPLRRMT ETGKLEALQA VNSLVSSGGT NIAEGLRKGF KVVVDRKWKN 370 380 390 400 410 420 PVCSIILLSD GQDTYTISGT SMTRPQADYK SLLPTSIHRN GSSGFRIPVH AFGFGSDHDA 430 440 450 460 470 480 ASMHSISEIS GGTFSFIEAE GVIQDAFAQC IGGLLSVVVQ ELQVKVESLH PRLEIGSIQA 490 500 510 520 530 540 GSYKSSIMAN AIMGFVDVGD LYAEEERDFL VTVNIPVDGT SDEMSLLKVS CTYRDPMTKG 550 560 570 580 590 600 MMTLEEASQV KIQRPEITGT RVVSMEVEKQ RNRLRAAEAM AEARAAAENG DLARAVSVLE 610 620 630 640 650 660 SCGKALSETA STRAGDRLCI ALCAELKEMQ ERMASRRVYE TSGRAYILSG LSSHSWQRAT 670 680 ARGDSTDSTN LMQAYQTPSM ADMVTQSQ

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)." Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S. Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nisqually.
[2]	US DOE Joint Genome Institute (JGI-PGF) Grigoriev I.V., Terry A., Salamov A.A., Otillar R., Lou Y., Lucas S., Hammon N., Glavina del Rio T., Detter J., Kalin E., Tice H., Pitluck S., Chapman J., Putnam N.H., Brunner A., Busov V., Campbell M., Chalot M. , Covert S., Davis J., DiFazio S., Gribskov M., Gunter L., Hamberger B., Jansson S., Joshi C., Larimer F., Martin F., Napoli C., Nelson D., Ralph S., Rombauts S., Rouze P., Schrader J., Tsai C., Vahala J., Tuskan G., Rokhsar D. Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Nisqually.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000345 Genomic DNA. Translation: EEE88242.1.
RefSeq	XP_002314287.1. XM_002314251.1.
UniGene	Pth.11815.
3D structure databases
ProteinModelPortal	B9HQC5.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7491153.
KEGG	pop:POPTR_204417.
Phylogenomic databases
eggNOG	COG2304.
Family and domain databases
Gene3D	3.30.40.10. 1 hit.
InterPro	IPR002035. VWF_A. IPR001841. Znf_RING. IPR013083. Znf_RING/FYVE/PHD. [Graphical view]
Pfam	PF00092. VWA. 1 hit. PF13639. zf-RING_2. 1 hit. [Graphical view]
SMART	SM00184. RING. 1 hit. SM00327. VWA. 1 hit. [Graphical view]
PROSITE	PS50234. VWFA. 1 hit. PS50089. ZF_RING_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B9HQC5_POPTR

Accession

Primary (citable) accession number: B9HQC5

Entry history

Integrated into UniProtKB/TrEMBL:	March 24, 2009
Last sequence update:	March 24, 2009
Last modified:	April 3, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)