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B9HPR0 (B9HPR0_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Predicted protein EMBL EEE88173.1
Gene names
ORF Names:POPTRDRAFT_768269 EMBL EEE88173.1
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]
Taxonomic identifier3694 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length442 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

Sequence LengthMass (Da)Tools
B9HPR0 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 30EA7D53F7E23487

FASTA44248,537
        10         20         30         40         50         60 
MVNDVEDDDS CPKPVGRSSV FYYGVGHMLN DITAACWFTY LLLFLTEIGL SPRDAAIVML 

        70         80         90        100        110        120 
AGQIADGFAT VFAGELIDRF GHFKIWHGAG SILAAISFSS VFGGCLPCKI LASSSPIIET 

       130        140        150        160        170        180 
ISYSTSAAIF NVGWAATQVS HMSMVNCISL NSTSRVVMTS CRNAFTMVAN LSLYAVALVV 

       190        200        210        220        230        240 
FSTTKATTHS DIENQYHWIA YTSIFIGCCF VGIFHLGTKE PRLKIRVHGT SYARISWAYW 

       250        260        270        280        290        300 
FKKVLYYQVG LVYMLTRLAQ NVSQAYLAFY VIEDMRMAKS AKALVPAIIY ISSFIVSIIM 

       310        320        330        340        350        360 
QEMYWTGQRL KAYYCAGGVL WVFCGASILF LPRSLSAFMY VISVFIGVAN TLMTITGVSM 

       370        380        390        400        410        420 
QSVLVGSDLD GCAFVYGSLS FLDKVSCGLA VFVLQSFQKY ISVTRYGLGL LPAVCSLTGM 

       430        440 
AITYTMKLQT PHSKSLMEPL LE

« Hide

References

[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CM000345 Genomic DNA. Translation: EEE88173.1.
RefSeqXP_002314218.1. XM_002314182.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsPOPTR_0009s02950.1; POPTR_0009s02950.1; POPTR_0009s02950.
GeneID7489289.
KEGGpop:POPTR_768269.

Phylogenomic databases

GeneTreeEPGT00050000015540.
OMAPSELCCA.
PhylomeDBB9HPR0.
ProtClustDBCLSN2693570.

Family and domain databases

InterProIPR016196. MFS_dom_general_subst_transpt.
[Graphical view]
SUPFAMSSF103473. MFS_gen_substrate_transporter. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB9HPR0_POPTR
AccessionPrimary (citable) accession number: B9HPR0
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: December 14, 2011
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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