B9HNU7 (B9HNU7_POPTR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Predicted protein EMBL EEE87282.1

Gene names

ORF Names:

POPTRDRAFT_821436 EMBL EEE87282.1

Organism

Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Reference proteome]

Taxonomic identifier

3694 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length	1105 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Domain	Repeat RuleBase RU003532 WD repeat RuleBase RU000362
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

	Sequence		Length	Mass (Da)
	B9HNU7 [UniParc]. Last modified March 24, 2009. Version 1. Checksum: 1E987B221E5E52D6	FASTA	1,105	119,415
	10 20 30 40 50 60 MASIKSVNRS ASVALAPDSP YMAAGTMAGA VDLSFSSSAN LEIFKLDFQS EDHDLPVVGE 70 80 90 100 110 120 CQSSERFNRL AWGRNGSGSD AYGLGLIAGG LVDGNIDIWN PLSLISSEPS ESALVSHLSR 130 140 150 160 170 180 HKGPVRGLEF NSINPNLLAS GADDGEICIW DLAAPAEPSH FPPLKGTGSA AQGEISYVSW 190 200 210 220 230 240 NCRVQHILAS TSSNGITVVW DLKKQKPAIS FGDSIRRRCS VLQWHPDVAT QLVVASDEDS 250 260 270 280 290 300 SPSLRLWDMR NVLEPVKEFV GHTKGVIGMS WCPNDSSYLL TCAKDNRTIC WNTVTGEIAC 310 320 330 340 350 360 ELPAGTNWNF DVHWYPKMPG VISASSFDGK IGIYNIEGCS RYIAGESDFG RGKLRAPKWY 370 380 390 400 410 420 KRPVGVSFGF GGKLVSFRPR SSAGGASECF SQVFLHNLVT EDSLVSRSSE FESAIQNGEK 430 440 450 460 470 480 PLLKALCDKK SQESESEDDR ETWGFLKVMF EEDGTARTRM LSHLGFSVPV EEKDAILEDD 490 500 510 520 530 540 LTREINAIRL DDTPADEMGY ENNQEATIFS ADDGEDFFNN LPSPKADTST VPSGDNVGLE 550 560 570 580 590 600 KSAPSAEEIS QETETPEESA DPSFDDCIQR ALVLGDYKEA VAQCITANKM ADALVIAHVG 610 620 630 640 650 660 GTSLWEKTRD QYLKMSSSPY LKIVSAMVNN DLMTLVNSRS LKYWKETLAL LCTFAPSEEW 670 680 690 700 710 720 SMLCNSLASK LMAAGNTLAA TLCYICAGNI DKTVEIWSRR LTVESEGKSY IDLLQDLMEK 730 740 750 760 770 780 TIVLALASGQ KQFSASLCKL VEKYAEILAS QGLLTTALEY LKLLGSDELS PELTILRDRI 790 800 810 820 830 840 ALSTETENGA VAQQMHQSVP GSPYSENYQQ PIDSSYGRGY GAPTPYQPAP QPLAYQPAPQ 850 860 870 880 890 900 PQMFVPTSAP QAPQPSFAPP APHAGTQQAT RTFVPANVPS LRNAQQYQQP TLGSQLYPGT 910 920 930 940 950 960 ATSAYNPVQP PTGSQGPIIS QVGAIPGHGI PQVAAPGPTP MGFRPVHAGV AQRPGIGLMQ 970 980 990 1000 1010 1020 PPSPTQSAPV QPAVAPAAPP PTVQTVDTSN VPAHHKPVIV TLTRLFNETS EALGGARANP 1030 1040 1050 1060 1070 1080 ARRREIEDNS RKIGALFAKL NSGDISKNAS DKLVQLCQAL DRNDFSSALQ IQACVTFTTS 1090 1100 EWDECNFWLA TLKRMIKARQ GAGVR

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)." Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S. Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nisqually.
[2]	US DOE Joint Genome Institute (JGI-PGF) Grigoriev I.V., Terry A., Salamov A.A., Otillar R., Lou Y., Lucas S., Hammon N., Glavina del Rio T., Detter J., Kalin E., Tice H., Pitluck S., Chapman J., Putnam N.H., Brunner A., Busov V., Campbell M., Chalot M. , Covert S., Davis J., DiFazio S., Gribskov M., Gunter L., Hamberger B., Jansson S., Joshi C., Larimer F., Martin F., Napoli C., Nelson D., Ralph S., Rombauts S., Rouze P., Schrader J., Tsai C., Vahala J., Tuskan G., Rokhsar D. Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Nisqually.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000345 Genomic DNA. Translation: EEE87282.1.
RefSeq	XP_002313327.1. XM_002313291.1.
UniGene	Pth.11922.
3D structure databases
ProteinModelPortal	B9HNU7.
ModBase	Search...
Protein-protein interaction databases
STRING	3694.estExt_fgenesh4_pg.C_LG_IX1026.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7467355.
KEGG	pop:POPTR_821436.
Phylogenomic databases
eggNOG	NOG248389.
KO	K14005.
ProtClustDB	CLSN2680494.
Family and domain databases
Gene3D	2.130.10.10. 3 hits.
InterPro	IPR015943. WD40/YVTN_repeat-like_dom. IPR001680. WD40_repeat. IPR019775. WD40_repeat_CS. IPR017986. WD40_repeat_dom. [Graphical view]
Pfam	PF00400. WD40. 2 hits. [Graphical view]
SMART	SM00320. WD40. 6 hits. [Graphical view]
SUPFAM	SSF50978. WD40_like. 1 hit.
PROSITE	PS00678. WD_REPEATS_1. 2 hits. PS50082. WD_REPEATS_2. 2 hits. PS50294. WD_REPEATS_REGION. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B9HNU7_POPTR

Accession

Primary (citable) accession number: B9HNU7

Entry history

Integrated into UniProtKB/TrEMBL:	March 24, 2009
Last sequence update:	March 24, 2009
Last modified:	April 3, 2013
This is version 31 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)