B9HN33 (B9HN33_POPTR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Predicted protein EMBL EEE87151.1

Gene names

ORF Names:

POPTRDRAFT_557552 EMBL EEE87151.1

Organism

Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]

Taxonomic identifier

3694 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length	662 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the class-II aminoacyl-tRNA synthetase family. RuleBase RU003746

Ontologies

Keywords
Biological process	Protein biosynthesis RuleBase RU003747
Ligand	ATP-binding RuleBase RU003747 Nucleotide-binding
Molecular function	Aminoacyl-tRNA synthetase RuleBase RU003747 Ligase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	tRNA aminoacylation for protein translation Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW aminoacyl-tRNA ligase activity Inferred from electronic annotation. Source: UniProtKB-KW nucleic acid binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B9HN33 [UniParc]. Last modified March 24, 2009. Version 1. Checksum: 111AB55CB10E74AF	FASTA	662	74,316
	10 20 30 40 50 60 MTLLLRSFPL ITLRTTIPSS LPLFQNLLRY HFPKSLQAKR TRALVTLSAS SSSPETILKP 70 80 90 100 110 120 QQQQPNDTLH WVSRTNFCGQ LSTNDVGTRV RLCGWVALHR VHGGLTFLNL RDHTGIVATS 130 140 150 160 170 180 PDEFPDAHSI INDLRVEYVV VVEGFVRSRP VESVNKKLIT GSIEVVAEHV QLLNAVKAKL 190 200 210 220 230 240 PFLVTTADDA KDSVKEEIRL RYRCLDLRRQ QMSSNIMLRH RVVKLIRRYL EDVQGFVEIE 250 260 270 280 290 300 TPILSRSTPE GARDYLVPSR IQPGTFYALP QSPQLFKQML MVSGFDKYYQ IARCFRDEDL 310 320 330 340 350 360 RADRQPEFTQ LDMELAFTTL EDMLRLNEDL IRKVFLEIKG VQLPNPIPRL TYAEAMSKYG 370 380 390 400 410 420 SDRPDTRFDL HLKEVSDIFA ESSFRVFADS LNSGGIIKVL CVPSGAKSYS NSALKKGDIY 430 440 450 460 470 480 NEAIKSGAKG LPFLKVLDDG ELEGISALVS SLDSTNKEQL LSRCSAGPGD LILFAVGHHP 490 500 510 520 530 540 SVHRTLDRLR LFIANQLGLV DHSRHSILWV TDFPMFEWNE TEQRLEALHH PFTAPNPEDM 550 560 570 580 590 600 EDLSSARALA YDMVYNGVEI GGGSLRIYKR EVQQKVLEIV GISPEQAEAK FGYLLEALDM 610 620 630 640 650 660 GAPPHGGIAY GLDRLAMLLA GATSIRDVIA FPKTTTAQCA LTRTPSEVDP QQLRDLSFSI QQ

References

[1]

"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)." Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S. Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nisqually.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000345 Genomic DNA. Translation: EEE87151.1.
RefSeq	XP_002313196.1. XM_002313160.1.
UniGene	Pth.6709.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	B9HN33.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7469656.
KEGG	pop:POPTR_557552.
Phylogenomic databases
GeneTree	EPGT00050000006677.
OMA	NEYAKEI.
ProtClustDB	PLN02903.
Family and domain databases
HAMAP	MF_00044_B. Asp_tRNA_synth_B. [Tree]
InterPro	IPR004364. aa-tRNA-synt_II. IPR018150. aa-tRNA-synt_II-like. IPR006195. aa-tRNA-synth_II. IPR004524. Asp-tRNA-synth_IIb_bac/mt. IPR002312. Asp/Asn-tRNA-synth_IIb. IPR004115. GAD_dom. IPR012340. NA-bd_OB-fold. IPR016027. NA-bd_OB-fold-like. IPR004365. NA-bd_OB_tRNA-helicase. [Graphical view]
Gene3D	G3DSA:3.30.1360.30. GAD_dom. 1 hit. G3DSA:2.40.50.140. OB_NA_bd_sub. 1 hit.
KO	K01876.
PANTHER	PTHR22594. aa-tRNA-synt_II. 1 hit. PTHR22594:SF5. AspS_bac. 1 hit.
Pfam	PF02938. GAD. 1 hit. PF00152. tRNA-synt_2. 1 hit. PF01336. tRNA_anti. 1 hit. [Graphical view]
PRINTS	PR01042. TRNASYNTHASP.
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit. SSF55261. SSF55261. 1 hit.
TIGRFAMs	TIGR00459. AspS_bact. 1 hit.
PROSITE	PS50862. AA_TRNA_LIGASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B9HN33_POPTR

Accession

Primary (citable) accession number: B9HN33

Entry history

Integrated into UniProtKB/TrEMBL:	March 24, 2009
Last sequence update:	March 24, 2009
Last modified:	December 14, 2011
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)