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B9HJL9

- B9HJL9_POPTR

UniProt

B9HJL9 - B9HJL9_POPTR

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Protein

Glutamate decarboxylase

Gene

POPTR_0008s14070g

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

Cofactori

Note: Pyridoxal phosphate.UniRule annotation

GO - Molecular functioni

  1. glutamate decarboxylase activity Source: UniProtKB-EC
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. glutamate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

DecarboxylaseUniRule annotation, Lyase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
Gene namesi
ORF Names:POPTR_0008s14070gImported
OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
Taxonomic identifieri3694 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
ProteomesiUP000006729: Unassembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi3694.fgenesh4_pg.C_LG_VIII001255.

Structurei

3D structure databases

ProteinModelPortaliB9HJL9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000070228.
InParanoidiB9HJL9.
KOiK01580.
OMAiHNEFEIA.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

Sequencei

Sequence statusi: Complete.

B9HJL9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MVLSKIFSQS DVSMHSTFAS RYVRESLPRY KMPENSIPKE AAFQIINDEL
60 70 80 90 100
MLDGKPRLNL ASFVTTWMEP ECDKLIMDSI NKNYVDMDEY PVTTELQNRC
110 120 130 140 150
VNMIAHLFNA PLGESEAAVG VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK
160 170 180 190 200
PCDKPNIVTG ANVQVCWEKF ARYFEVELKE VKLTEDYYVM DPAKAVELVD
210 220 230 240 250
ENTICVAAIL GSTLNGEFED VKLLNDLLLE KNKITGWDTP IHVDAASGGF
260 270 280 290 300
IAPFLWPELE WDFRLPLVKS INVSGHKYGL VYAGVGWVIW RSKEDLPEEL
310 320 330 340 350
IFHINYLGSD QPTFTLNFSK GSSQIIAQYY QLIRLGYEGY RNVMDNCHDN
360 370 380 390 400
AMVLKEGLEK TGRFKIVSKD IGVPLVAFSL KDQNRGHNEF EIAETLRRFG
410 420 430 440 450
WIVPAYTMPA DAKHITVLRV VIREDFSRTL AERLVLDITK VMHELDALPA
460 470 480 490 500
KPSSKMSING NENGKISGSL EGKNGTVVKK TAMETQREIT TYWKNFVMAK

KSDKNKIC
Length:508
Mass (Da):57,424
Last modified:March 24, 2009 - v1
Checksum:iDEC6EFB483BAD16D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000344 Genomic DNA. Translation: EEE89858.1.
RefSeqiXP_002312491.1. XM_002312455.2.

Genome annotation databases

EnsemblPlantsiPOPTR_0008s14070.1; POPTR_0008s14070.1; POPTR_0008s14070.
GeneIDi7457832.
KEGGipop:POPTR_0008s14070g.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000344 Genomic DNA. Translation: EEE89858.1 .
RefSeqi XP_002312491.1. XM_002312455.2.

3D structure databases

ProteinModelPortali B9HJL9.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3694.fgenesh4_pg.C_LG_VIII001255.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi POPTR_0008s14070.1 ; POPTR_0008s14070.1 ; POPTR_0008s14070 .
GeneIDi 7457832.
KEGGi pop:POPTR_0008s14070g.

Phylogenomic databases

eggNOGi COG0076.
HOGENOMi HOG000070228.
InParanoidi B9HJL9.
KOi K01580.
OMAi HNEFEIA.

Family and domain databases

Gene3Di 3.40.640.10. 1 hit.
InterProi IPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view ]
Pfami PF00282. Pyridoxal_deC. 1 hit.
[Graphical view ]
SUPFAMi SSF53383. SSF53383. 1 hit.
TIGRFAMsi TIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
    Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A.
    , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
    Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NisquallyImported.

Entry informationi

Entry nameiB9HJL9_POPTR
AccessioniPrimary (citable) accession number: B9HJL9
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: November 26, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3