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B9HJL9 (B9HJL9_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length508 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Sequences

Sequence LengthMass (Da)Tools
B9HJL9 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: DEC6EFB483BAD16D

FASTA50857,424
        10         20         30         40         50         60 
MVLSKIFSQS DVSMHSTFAS RYVRESLPRY KMPENSIPKE AAFQIINDEL MLDGKPRLNL 

        70         80         90        100        110        120 
ASFVTTWMEP ECDKLIMDSI NKNYVDMDEY PVTTELQNRC VNMIAHLFNA PLGESEAAVG 

       130        140        150        160        170        180 
VGTVGSSEAI MLAGLAFKRK WQNKRKAEGK PCDKPNIVTG ANVQVCWEKF ARYFEVELKE 

       190        200        210        220        230        240 
VKLTEDYYVM DPAKAVELVD ENTICVAAIL GSTLNGEFED VKLLNDLLLE KNKITGWDTP 

       250        260        270        280        290        300 
IHVDAASGGF IAPFLWPELE WDFRLPLVKS INVSGHKYGL VYAGVGWVIW RSKEDLPEEL 

       310        320        330        340        350        360 
IFHINYLGSD QPTFTLNFSK GSSQIIAQYY QLIRLGYEGY RNVMDNCHDN AMVLKEGLEK 

       370        380        390        400        410        420 
TGRFKIVSKD IGVPLVAFSL KDQNRGHNEF EIAETLRRFG WIVPAYTMPA DAKHITVLRV 

       430        440        450        460        470        480 
VIREDFSRTL AERLVLDITK VMHELDALPA KPSSKMSING NENGKISGSL EGKNGTVVKK 

       490        500 
TAMETQREIT TYWKNFVMAK KSDKNKIC 

« Hide

References

« Hide 'large scale' references
[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.
[2]US DOE Joint Genome Institute (JGI-PGF)
Grigoriev I.V., Terry A., Salamov A.A., Otillar R., Lou Y., Lucas S., Hammon N., Glavina del Rio T., Detter J., Kalin E., Tice H., Pitluck S., Chapman J., Putnam N.H., Brunner A., Busov V., Campbell M., Chalot M. expand/collapse author list , Covert S., Davis J., DiFazio S., Gribskov M., Gunter L., Hamberger B., Jansson S., Joshi C., Larimer F., Martin F., Napoli C., Nelson D., Ralph S., Rombauts S., Rouze P., Schrader J., Tsai C., Vahala J., Tuskan G., Rokhsar D.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000344 Genomic DNA. Translation: EEE89858.1.
RefSeqXP_002312491.1. XM_002312455.2.

3D structure databases

ProteinModelPortalB9HJL9.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING3694.fgenesh4_pg.C_LG_VIII001255.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsPOPTR_0008s14070.1; POPTR_0008s14070.1; POPTR_0008s14070.
GeneID7457832.
KEGGpop:POPTR_0008s14070g.

Phylogenomic databases

eggNOGCOG0076.
HOGENOMHOG000070228.
KOK01580.
OMAHNEFEIA.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
InterProIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB9HJL9_POPTR
AccessionPrimary (citable) accession number: B9HJL9
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: May 14, 2014
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)