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B9HIW8 (B9HIW8_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length1023 AA.
Sequence statusComplete.
Protein existenceInferred from homology

Sequences

Sequence LengthMass (Da)Tools
B9HIW8 [UniParc].

Last modified December 11, 2013. Version 2.
Checksum: E1AEF779AB0E1DC7

FASTA1,023115,090
        10         20         30         40         50         60 
MTDTTDDIAE EISFQGFDDY CKLLKNLLND VLQREVGTDF VEKLERNRTL AQSACNLRLA 

        70         80         90        100        110        120 
GIEDTAELLE KQLASEISKM TLEEALTLAR AFSHYLNLMG IAETHHRVRK TRDLAHLSKS 

       130        140        150        160        170        180 
CDEVFNQLLQ GGTSADELYD SVCKQEVEIV LTAHPTQINR RTLQYKHVRI AHLLDYNDRP 

       190        200        210        220        230        240 
DLTQEDREML IEDLVREITS IWQTDELRRH KPTPADEARS GLHIVEQSLW KAVPHYLRRV 

       250        260        270        280        290        300 
STALKKHTGK PLPLTCTPIK FGSWMGGDRD GNPNVTAKVT RDVSLLSRWM AIDLYIREAD 

       310        320        330        340        350        360 
SLRFELSMSR CSDKLSREAH DILEQETSPE DRHEGWNQLM SRNQTKHHGQ QTPSLPTQLP 

       370        380        390        400        410        420 
ATADLPSCTD SSHGCCKSIT NGSTANSDSH QSAPSPRGSF TSSQLLAQRK LLAESKIVRS 

       430        440        450        460        470        480 
SFQKLLEPSL PQRPGIAPYR IVLGHVKDKL TKTRRRLELL LEDLPCEYEP WDYYETTDQL 

       490        500        510        520        530        540 
LEPLLLCYES LQSCGAGVLA DGRLADLIRR VATFGMVLMK LDLRQESGRH SEALDAITKY 

       550        560        570        580        590        600 
LDMGTYSEWD EEKKLEFLTR ELKSKRPLVP STIQVTPDVK EVLDTFRVAA ELGSDSLGAY 

       610        620        630        640        650        660 
VISMASNASD VLAVELLQKD ARLAVSGELG KPCPGGTLRV VPLFETVKDL RGAGLVIRKL 

       670        680        690        700        710        720 
LSIDWYSEHI IKNHSGHQEV MVGYSDSGKD AGRFTAAWEL YKAQEDVVAA CKDNQIKVTL 

       730        740        750        760        770        780 
FHGRGGSIGR GGGPTYLAIQ SQPPGSVMGT LRSTEQGEMV QAKFGLPHTA VRQLEIYTTA 

       790        800        810        820        830        840 
VLLATLKPPE RPREEKWRNL MDEISKISCQ SYRSTVYENP EFLAYFHEAT PQAELGFLNI 

       850        860        870        880        890        900 
GSRPTRRKSS TGIGHLRAIP WVFAWTQTRF VLPAWLGVGA GLKGVCEKGH TQDLKAMYKE 

       910        920        930        940        950        960 
WPFFQSTIDL IEMVLGKADV PIAKHYDEVL VSDKSRRELG AALRRELLTT EKFVLVVSGH 

       970        980        990       1000       1010       1020 
ERLSENNRSL RRLIESRLPY LNPINMLQVE ILKRLRSDDD NHKLRDALLI TINGIAAGMR 


NTG 

« Hide

References

« Hide 'large scale' references
[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.
[2]US DOE Joint Genome Institute (JGI-PGF)
Grigoriev I.V., Terry A., Salamov A.A., Otillar R., Lou Y., Lucas S., Hammon N., Glavina del Rio T., Detter J., Kalin E., Tice H., Pitluck S., Chapman J., Putnam N.H., Brunner A., Busov V., Campbell M., Chalot M. expand/collapse author list , Covert S., Davis J., DiFazio S., Gribskov M., Gunter L., Hamberger B., Jansson S., Joshi C., Larimer F., Martin F., Napoli C., Nelson D., Ralph S., Rombauts S., Rouze P., Schrader J., Tsai C., Vahala J., Tuskan G., Rokhsar D.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000344 Genomic DNA. Translation: EEE89738.2.
RefSeqXP_002312371.2. XM_002312335.2.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING3694.eugene3.00081063.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7485946.
KEGGpop:POPTR_0008s11330g.

Phylogenomic databases

eggNOGCOG2352.
HOGENOMHOG000238648.
KOK01595.

Family and domain databases

HAMAPMF_00595. PEPcase_type1.
InterProIPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamPF00311. PEPcase. 2 hits.
[Graphical view]
PRINTSPR00150. PEPCARBXLASE.
SUPFAMSSF51621. SSF51621. 2 hits.
PROSITEPS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9HIW8_POPTR
AccessionPrimary (citable) accession number: B9HIW8
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: December 11, 2013
Last modified: June 11, 2014
This is version 30 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)