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B9HHA3

- B9HHA3_POPTR

UniProt

B9HHA3 - B9HHA3_POPTR

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Protein
Submitted name:

Polycomb group protein CURLY LEAF

Gene

POPTR_0007s10830g

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. chromatin binding Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Polycomb group protein CURLY LEAFImported
Gene namesi
ORF Names:POPTR_0007s10830gImported
OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
Taxonomic identifieri3694 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
ProteomesiUP000006729: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

  1. PcG protein complex Source: InterPro
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi3694.estExt_Genewise1_v1.C_LG_VII2923.

Family & Domainsi

Sequence similaritiesi

Contains 1 SET domain.UniRule annotation
Contains SET domain.SAAS annotation

Phylogenomic databases

eggNOGiCOG2940.
HOGENOMiHOG000083511.
InParanoidiB9HHA3.
KOiK11430.
OMAiWKSAGYH.

Family and domain databases

InterProiIPR026489. CXC_dom.
IPR025778. Hist-Lys_N-MeTrfase_EZ.
IPR001005. SANT/Myb.
IPR001214. SET_dom.
[Graphical view]
PfamiPF00856. SET. 1 hit.
[Graphical view]
SMARTiSM00717. SANT. 1 hit.
SM00317. SET. 1 hit.
[Graphical view]
PROSITEiPS51633. CXC. 1 hit.
PS51576. SAM_MT43_EZ. 1 hit.
PS50280. SET. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B9HHA3-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MESDEETALT SKMVLSVIES LKKQVAADRC FYVMKRMEDN KQKLVGVTNH
60 70 80 90 100
LYKLSKERKN SWISDTDNSV DLFTKRQKDA LSMHGGIDSS NVDKDSLGSE
110 120 130 140 150
EDGNTSTAVL LGSSIPVKNA VRPIKLPEVK RLPPYTSWIF LDRNQRMTED
160 170 180 190 200
QSVLGRRRIY YDQNGGEALI CSDSEEEIID EEEEKRDFLE SEDYILRMTI
210 220 230 240 250
KEAGLSDPVV ESLAQCFSRS SSEVKVRFEV LKKEEKAVED SKNKDNEAQT
260 270 280 290 300
LNSFLDKDLE VALDSFDNLF CRRCLVFDCR LHGCSQDLIF PAEKQSPWSY
310 320 330 340 350
PDDNITCGPQ CYKSVLKSER ISSGISPERG FIEENSVCQS DGAGVPITSR
360 370 380 390 400
KKSSAPSANR RVKSCQSESA SSNAKNISES SDSEIGPRQD TSPTSQLSPS
410 420 430 440 450
KIKLVGKGGT CKRNSKRVAE RVLSCMRKRQ KKMVASDTDS VASGGLLSSD
460 470 480 490 500
MKLRSTSHKG KEDASSSSHK NLKSPTTARS RRKSEFHDGP SSEMVMDPPV
510 520 530 540 550
PSSDDTFRKE EFIGKNTCKK ELSDNRSWKA IEKSLFEKGV EIFGGNSCLI
560 570 580 590 600
ARNLLNGLKT CWEVFQYITR SENRLACEAG DAGTLGEGYS KFDCSGTNEA
610 620 630 640 650
RRRSRFLRRR GRVRRLKYSW KSTAYHSIRK RITERKDQPC RQYNPCSCQA
660 670 680 690 700
ACGKQCTCLL NGTCCEKYCG CPKSCKNRFR GCHCAKSQCR SRQCPCFAAD
710 720 730 740 750
RECDPDVCRN CWVSCGDGTL GIPSQRGDNY ECRNMKLLLK QQQRVLLGRS
760 770 780 790 800
DVSGWGAFLK NSVGKHEYLG EYTGELISHR EADKRGKIYD RENSSFLFNL
810 820 830 840 850
NDQFVLDAYR KGDKLKFANH SPEPNCYAKV IMVAGDHRVG IFAKERINAG
860 870 880 890
EELFYDYRYE PDRAPAWARK PEASGSKKED GGHSSGRAKK LA
Length:892
Mass (Da):100,283
Last modified:December 11, 2013 - v2
Checksum:i1D7B5BBCA199B99F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000343 Genomic DNA. Translation: EEE90579.2.
RefSeqiXP_002310129.2. XM_002310093.2.

Genome annotation databases

GeneIDi7462603.
KEGGipop:POPTR_0007s10830g.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000343 Genomic DNA. Translation: EEE90579.2 .
RefSeqi XP_002310129.2. XM_002310093.2.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3694.estExt_Genewise1_v1.C_LG_VII2923.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 7462603.
KEGGi pop:POPTR_0007s10830g.

Phylogenomic databases

eggNOGi COG2940.
HOGENOMi HOG000083511.
InParanoidi B9HHA3.
KOi K11430.
OMAi WKSAGYH.

Family and domain databases

InterProi IPR026489. CXC_dom.
IPR025778. Hist-Lys_N-MeTrfase_EZ.
IPR001005. SANT/Myb.
IPR001214. SET_dom.
[Graphical view ]
Pfami PF00856. SET. 1 hit.
[Graphical view ]
SMARTi SM00717. SANT. 1 hit.
SM00317. SET. 1 hit.
[Graphical view ]
PROSITEi PS51633. CXC. 1 hit.
PS51576. SAM_MT43_EZ. 1 hit.
PS50280. SET. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
    Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A.
    , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
    Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NisquallyImported.

Entry informationi

Entry nameiB9HHA3_POPTR
AccessioniPrimary (citable) accession number: B9HHA3
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: December 11, 2013
Last modified: October 29, 2014
This is version 38 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3