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B9HHA3 (B9HHA3_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length892 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 SET domain. RuleBase RU004538

Contains SET domain. SAAS SAAS001214

Sequences

Sequence LengthMass (Da)Tools
B9HHA3 [UniParc].

Last modified December 11, 2013. Version 2.
Checksum: 1D7B5BBCA199B99F

FASTA892100,283
        10         20         30         40         50         60 
MESDEETALT SKMVLSVIES LKKQVAADRC FYVMKRMEDN KQKLVGVTNH LYKLSKERKN 

        70         80         90        100        110        120 
SWISDTDNSV DLFTKRQKDA LSMHGGIDSS NVDKDSLGSE EDGNTSTAVL LGSSIPVKNA 

       130        140        150        160        170        180 
VRPIKLPEVK RLPPYTSWIF LDRNQRMTED QSVLGRRRIY YDQNGGEALI CSDSEEEIID 

       190        200        210        220        230        240 
EEEEKRDFLE SEDYILRMTI KEAGLSDPVV ESLAQCFSRS SSEVKVRFEV LKKEEKAVED 

       250        260        270        280        290        300 
SKNKDNEAQT LNSFLDKDLE VALDSFDNLF CRRCLVFDCR LHGCSQDLIF PAEKQSPWSY 

       310        320        330        340        350        360 
PDDNITCGPQ CYKSVLKSER ISSGISPERG FIEENSVCQS DGAGVPITSR KKSSAPSANR 

       370        380        390        400        410        420 
RVKSCQSESA SSNAKNISES SDSEIGPRQD TSPTSQLSPS KIKLVGKGGT CKRNSKRVAE 

       430        440        450        460        470        480 
RVLSCMRKRQ KKMVASDTDS VASGGLLSSD MKLRSTSHKG KEDASSSSHK NLKSPTTARS 

       490        500        510        520        530        540 
RRKSEFHDGP SSEMVMDPPV PSSDDTFRKE EFIGKNTCKK ELSDNRSWKA IEKSLFEKGV 

       550        560        570        580        590        600 
EIFGGNSCLI ARNLLNGLKT CWEVFQYITR SENRLACEAG DAGTLGEGYS KFDCSGTNEA 

       610        620        630        640        650        660 
RRRSRFLRRR GRVRRLKYSW KSTAYHSIRK RITERKDQPC RQYNPCSCQA ACGKQCTCLL 

       670        680        690        700        710        720 
NGTCCEKYCG CPKSCKNRFR GCHCAKSQCR SRQCPCFAAD RECDPDVCRN CWVSCGDGTL 

       730        740        750        760        770        780 
GIPSQRGDNY ECRNMKLLLK QQQRVLLGRS DVSGWGAFLK NSVGKHEYLG EYTGELISHR 

       790        800        810        820        830        840 
EADKRGKIYD RENSSFLFNL NDQFVLDAYR KGDKLKFANH SPEPNCYAKV IMVAGDHRVG 

       850        860        870        880        890 
IFAKERINAG EELFYDYRYE PDRAPAWARK PEASGSKKED GGHSSGRAKK LA 

« Hide

References

« Hide 'large scale' references
[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.
[2]US DOE Joint Genome Institute (JGI-PGF)
Grigoriev I.V., Terry A., Salamov A.A., Otillar R., Lou Y., Lucas S., Hammon N., Glavina del Rio T., Detter J., Kalin E., Tice H., Pitluck S., Chapman J., Putnam N.H., Brunner A., Busov V., Campbell M., Chalot M. expand/collapse author list , Covert S., Davis J., DiFazio S., Gribskov M., Gunter L., Hamberger B., Jansson S., Joshi C., Larimer F., Martin F., Napoli C., Nelson D., Ralph S., Rombauts S., Rouze P., Schrader J., Tsai C., Vahala J., Tuskan G., Rokhsar D.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000343 Genomic DNA. Translation: EEE90579.2.
RefSeqXP_002310129.2. XM_002310093.2.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING3694.estExt_Genewise1_v1.C_LG_VII2923.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7462603.
KEGGpop:POPTR_0007s10830g.

Phylogenomic databases

eggNOGCOG2940.
HOGENOMHOG000083511.
KOK11430.
OMAWKSAGYH.

Family and domain databases

InterProIPR026489. CXC_dom.
IPR025778. Hist-Lys_N-MeTrfase_EZ.
IPR001005. SANT/Myb.
IPR001214. SET_dom.
[Graphical view]
PfamPF00856. SET. 1 hit.
[Graphical view]
SMARTSM00717. SANT. 1 hit.
SM00317. SET. 1 hit.
[Graphical view]
PROSITEPS51633. CXC. 1 hit.
PS51576. SAM_MT43_EZ. 1 hit.
PS50280. SET. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9HHA3_POPTR
AccessionPrimary (citable) accession number: B9HHA3
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: December 11, 2013
Last modified: June 11, 2014
This is version 35 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)