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B9HHA3

- B9HHA3_POPTR

UniProt

B9HHA3 - B9HHA3_POPTR

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Protein
Submitted name:

Polycomb group protein CURLY LEAF

Gene
POPTR_0007s10830g
Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. chromatin binding Source: InterPro
  2. single-stranded RNA binding Source: EnsemblPlants/Gramene

GO - Biological processi

  1. DNA mediated transformation Source: EnsemblPlants/Gramene
  2. histone methylation Source: EnsemblPlants/Gramene
  3. leaf morphogenesis Source: EnsemblPlants/Gramene
  4. negative regulation of molecular function, epigenetic Source: EnsemblPlants/Gramene
  5. regulation of gene expression by genetic imprinting Source: EnsemblPlants/Gramene
  6. vegetative to reproductive phase transition of meristem Source: EnsemblPlants/Gramene
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Polycomb group protein CURLY LEAFImported
Gene namesi
ORF Names:POPTR_0007s10830gImported
OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
Taxonomic identifieri3694 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
ProteomesiUP000006729: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

  1. PcG protein complex Source: InterPro
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi3694.estExt_Genewise1_v1.C_LG_VII2923.

Family & Domainsi

Sequence similaritiesi

Contains 1 SET domain.UniRule annotation
Contains SET domain.SAAS annotations

Phylogenomic databases

eggNOGiCOG2940.
HOGENOMiHOG000083511.
KOiK11430.
OMAiWKSAGYH.

Family and domain databases

InterProiIPR026489. CXC_dom.
IPR025778. Hist-Lys_N-MeTrfase_EZ.
IPR001005. SANT/Myb.
IPR001214. SET_dom.
[Graphical view]
PfamiPF00856. SET. 1 hit.
[Graphical view]
SMARTiSM00717. SANT. 1 hit.
SM00317. SET. 1 hit.
[Graphical view]
PROSITEiPS51633. CXC. 1 hit.
PS51576. SAM_MT43_EZ. 1 hit.
PS50280. SET. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B9HHA3-1 [UniParc]FASTAAdd to Basket

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MESDEETALT SKMVLSVIES LKKQVAADRC FYVMKRMEDN KQKLVGVTNH    50
LYKLSKERKN SWISDTDNSV DLFTKRQKDA LSMHGGIDSS NVDKDSLGSE 100
EDGNTSTAVL LGSSIPVKNA VRPIKLPEVK RLPPYTSWIF LDRNQRMTED 150
QSVLGRRRIY YDQNGGEALI CSDSEEEIID EEEEKRDFLE SEDYILRMTI 200
KEAGLSDPVV ESLAQCFSRS SSEVKVRFEV LKKEEKAVED SKNKDNEAQT 250
LNSFLDKDLE VALDSFDNLF CRRCLVFDCR LHGCSQDLIF PAEKQSPWSY 300
PDDNITCGPQ CYKSVLKSER ISSGISPERG FIEENSVCQS DGAGVPITSR 350
KKSSAPSANR RVKSCQSESA SSNAKNISES SDSEIGPRQD TSPTSQLSPS 400
KIKLVGKGGT CKRNSKRVAE RVLSCMRKRQ KKMVASDTDS VASGGLLSSD 450
MKLRSTSHKG KEDASSSSHK NLKSPTTARS RRKSEFHDGP SSEMVMDPPV 500
PSSDDTFRKE EFIGKNTCKK ELSDNRSWKA IEKSLFEKGV EIFGGNSCLI 550
ARNLLNGLKT CWEVFQYITR SENRLACEAG DAGTLGEGYS KFDCSGTNEA 600
RRRSRFLRRR GRVRRLKYSW KSTAYHSIRK RITERKDQPC RQYNPCSCQA 650
ACGKQCTCLL NGTCCEKYCG CPKSCKNRFR GCHCAKSQCR SRQCPCFAAD 700
RECDPDVCRN CWVSCGDGTL GIPSQRGDNY ECRNMKLLLK QQQRVLLGRS 750
DVSGWGAFLK NSVGKHEYLG EYTGELISHR EADKRGKIYD RENSSFLFNL 800
NDQFVLDAYR KGDKLKFANH SPEPNCYAKV IMVAGDHRVG IFAKERINAG 850
EELFYDYRYE PDRAPAWARK PEASGSKKED GGHSSGRAKK LA 892
Length:892
Mass (Da):100,283
Last modified:December 11, 2013 - v2
Checksum:i1D7B5BBCA199B99F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000343 Genomic DNA. Translation: EEE90579.2.
RefSeqiXP_002310129.2. XM_002310093.2.

Genome annotation databases

GeneIDi7462603.
KEGGipop:POPTR_0007s10830g.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000343 Genomic DNA. Translation: EEE90579.2 .
RefSeqi XP_002310129.2. XM_002310093.2.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3694.estExt_Genewise1_v1.C_LG_VII2923.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 7462603.
KEGGi pop:POPTR_0007s10830g.

Phylogenomic databases

eggNOGi COG2940.
HOGENOMi HOG000083511.
KOi K11430.
OMAi WKSAGYH.

Family and domain databases

InterProi IPR026489. CXC_dom.
IPR025778. Hist-Lys_N-MeTrfase_EZ.
IPR001005. SANT/Myb.
IPR001214. SET_dom.
[Graphical view ]
Pfami PF00856. SET. 1 hit.
[Graphical view ]
SMARTi SM00717. SANT. 1 hit.
SM00317. SET. 1 hit.
[Graphical view ]
PROSITEi PS51633. CXC. 1 hit.
PS51576. SAM_MT43_EZ. 1 hit.
PS50280. SET. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
    Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A.
    , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
    Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nisqually.

Entry informationi

Entry nameiB9HHA3_POPTR
AccessioniPrimary (citable) accession number: B9HHA3
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: December 11, 2013
Last modified: September 3, 2014
This is version 36 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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