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B9HHA3

- B9HHA3_POPTR

UniProt

B9HHA3 - B9HHA3_POPTR

Protein
Submitted name:

Polycomb group protein CURLY LEAF

Gene

POPTR_0007s10830g

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 37 (01 Oct 2014)
      Sequence version 2 (11 Dec 2013)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. chromatin binding Source: InterPro
    2. single-stranded RNA binding Source: EnsemblPlants/Gramene

    GO - Biological processi

    1. DNA mediated transformation Source: EnsemblPlants/Gramene
    2. histone methylation Source: EnsemblPlants/Gramene
    3. leaf morphogenesis Source: EnsemblPlants/Gramene
    4. negative regulation of molecular function, epigenetic Source: EnsemblPlants/Gramene
    5. regulation of gene expression by genetic imprinting Source: EnsemblPlants/Gramene
    6. vegetative to reproductive phase transition of meristem Source: EnsemblPlants/Gramene

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Polycomb group protein CURLY LEAFImported
    Gene namesi
    ORF Names:POPTR_0007s10830gImported
    OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
    Taxonomic identifieri3694 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
    ProteomesiUP000006729: Unassembled WGS sequence

    Subcellular locationi

    GO - Cellular componenti

    1. PcG protein complex Source: InterPro

    Interactioni

    Protein-protein interaction databases

    STRINGi3694.estExt_Genewise1_v1.C_LG_VII2923.

    Family & Domainsi

    Sequence similaritiesi

    Contains 1 SET domain.UniRule annotation
    Contains SET domain.SAAS annotation

    Phylogenomic databases

    eggNOGiCOG2940.
    HOGENOMiHOG000083511.
    KOiK11430.
    OMAiWKSAGYH.

    Family and domain databases

    InterProiIPR026489. CXC_dom.
    IPR025778. Hist-Lys_N-MeTrfase_EZ.
    IPR001005. SANT/Myb.
    IPR001214. SET_dom.
    [Graphical view]
    PfamiPF00856. SET. 1 hit.
    [Graphical view]
    SMARTiSM00717. SANT. 1 hit.
    SM00317. SET. 1 hit.
    [Graphical view]
    PROSITEiPS51633. CXC. 1 hit.
    PS51576. SAM_MT43_EZ. 1 hit.
    PS50280. SET. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B9HHA3-1 [UniParc]FASTAAdd to Basket

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    MESDEETALT SKMVLSVIES LKKQVAADRC FYVMKRMEDN KQKLVGVTNH    50
    LYKLSKERKN SWISDTDNSV DLFTKRQKDA LSMHGGIDSS NVDKDSLGSE 100
    EDGNTSTAVL LGSSIPVKNA VRPIKLPEVK RLPPYTSWIF LDRNQRMTED 150
    QSVLGRRRIY YDQNGGEALI CSDSEEEIID EEEEKRDFLE SEDYILRMTI 200
    KEAGLSDPVV ESLAQCFSRS SSEVKVRFEV LKKEEKAVED SKNKDNEAQT 250
    LNSFLDKDLE VALDSFDNLF CRRCLVFDCR LHGCSQDLIF PAEKQSPWSY 300
    PDDNITCGPQ CYKSVLKSER ISSGISPERG FIEENSVCQS DGAGVPITSR 350
    KKSSAPSANR RVKSCQSESA SSNAKNISES SDSEIGPRQD TSPTSQLSPS 400
    KIKLVGKGGT CKRNSKRVAE RVLSCMRKRQ KKMVASDTDS VASGGLLSSD 450
    MKLRSTSHKG KEDASSSSHK NLKSPTTARS RRKSEFHDGP SSEMVMDPPV 500
    PSSDDTFRKE EFIGKNTCKK ELSDNRSWKA IEKSLFEKGV EIFGGNSCLI 550
    ARNLLNGLKT CWEVFQYITR SENRLACEAG DAGTLGEGYS KFDCSGTNEA 600
    RRRSRFLRRR GRVRRLKYSW KSTAYHSIRK RITERKDQPC RQYNPCSCQA 650
    ACGKQCTCLL NGTCCEKYCG CPKSCKNRFR GCHCAKSQCR SRQCPCFAAD 700
    RECDPDVCRN CWVSCGDGTL GIPSQRGDNY ECRNMKLLLK QQQRVLLGRS 750
    DVSGWGAFLK NSVGKHEYLG EYTGELISHR EADKRGKIYD RENSSFLFNL 800
    NDQFVLDAYR KGDKLKFANH SPEPNCYAKV IMVAGDHRVG IFAKERINAG 850
    EELFYDYRYE PDRAPAWARK PEASGSKKED GGHSSGRAKK LA 892
    Length:892
    Mass (Da):100,283
    Last modified:December 11, 2013 - v2
    Checksum:i1D7B5BBCA199B99F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000343 Genomic DNA. Translation: EEE90579.2.
    RefSeqiXP_002310129.2. XM_002310093.2.

    Genome annotation databases

    GeneIDi7462603.
    KEGGipop:POPTR_0007s10830g.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000343 Genomic DNA. Translation: EEE90579.2 .
    RefSeqi XP_002310129.2. XM_002310093.2.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3694.estExt_Genewise1_v1.C_LG_VII2923.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 7462603.
    KEGGi pop:POPTR_0007s10830g.

    Phylogenomic databases

    eggNOGi COG2940.
    HOGENOMi HOG000083511.
    KOi K11430.
    OMAi WKSAGYH.

    Family and domain databases

    InterProi IPR026489. CXC_dom.
    IPR025778. Hist-Lys_N-MeTrfase_EZ.
    IPR001005. SANT/Myb.
    IPR001214. SET_dom.
    [Graphical view ]
    Pfami PF00856. SET. 1 hit.
    [Graphical view ]
    SMARTi SM00717. SANT. 1 hit.
    SM00317. SET. 1 hit.
    [Graphical view ]
    PROSITEi PS51633. CXC. 1 hit.
    PS51576. SAM_MT43_EZ. 1 hit.
    PS50280. SET. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
      Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A.
      , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
      Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. NisquallyImported.

    Entry informationi

    Entry nameiB9HHA3_POPTR
    AccessioniPrimary (citable) accession number: B9HHA3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 24, 2009
    Last sequence update: December 11, 2013
    Last modified: October 1, 2014
    This is version 37 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3