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B9HGN2 (B9HGN2_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 19. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Predicted protein EMBL EEE90849.1
Gene names
ORF Names:POPTRDRAFT_763726 EMBL EEE90849.1
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]
Taxonomic identifier3694 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length346 AA.
Sequence statusComplete.
Protein existenceInferred from homology

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processpyrimidine base biosynthetic process

Inferred from electronic annotation. Source: InterPro

   Molecular functiondihydroorotase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B9HGN2 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 80176C2115A19F3C

FASTA34638,177
        10         20         30         40         50         60 
MELTITQPDD WHLHLRDGEL LQAVAPHSAN FFGRAIVMPN LKPPITSTAV AAAYRESILK 

        70         80         90        100        110        120 
ALPADSDFSP LMTLYLTDTT SPREIKLARE SGVVFAVKLY PAGATTNSQD GVTDLFGKCL 

       130        140        150        160        170        180 
PVLEEMAEQN MPLLVHGEVT DPNVDVFDRE KVFIDTILQP LIQRLPQLKV VMEHITTMEA 

       190        200        210        220        230        240 
VRFVESCSYG SVAATVTPQH LLLNRNAIFQ GGLQPHNYCL PVLKREIHRQ AIVSAVTSGN 

       250        260        270        280        290        300 
KKFFLGTDSA PHEKRRKECP CGCAGIYNAP VAISLYAKVF EEAGALDKLE AFTSFNGPDF 

       310        320        330        340 
YGLPRNTSKI KLTRTPWKVP ESFSFSFGDI VPMSAGETLE WQPSSI

« Hide

References

[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CM000343 Genomic DNA. Translation: EEE90849.1.
RefSeqXP_002310399.1. XM_002310363.1.

3D structure databases

ProteinModelPortalB9HGN2.
ModBaseSearch...

Protein-protein interaction databases

STRINGB9HGN2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsPOPTR_0007s00940.1; POPTR_0007s00940.1; POPTR_0007s00940.
GeneID7469552.
KEGGpop:POPTR_763726.

Phylogenomic databases

GeneTreeEPGT00050000018991.
OMAGEIVPMF.
PhylomeDBB9HGN2.
ProtClustDBPLN02599.

Family and domain databases

HAMAPMF_00219. PyrC_type1.
[Tree]
InterProIPR006680. Amidohydro_1.
IPR004721. DHOdimr.
IPR002195. Dihydroorotase_CS.
[Graphical view]
KOK01465.
PfamPF01979. Amidohydro_1. 1 hit.
[Graphical view]
PIRSFPIRSF001237. DHOdimr. 1 hit.
TIGRFAMsTIGR00856. PyrC_dimer. 1 hit.
PROSITEPS00482. DIHYDROOROTASE_1. 1 hit.
PS00483. DIHYDROOROTASE_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9HGN2_POPTR
AccessionPrimary (citable) accession number: B9HGN2
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: December 14, 2011
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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