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B9HEW3 (B9HEW3_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:POPTR_0007s12750g EMBL EEE90675.1
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Reference proteome] EMBL EEE90675.1
Taxonomic identifier3694 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus

Protein attributes

Sequence length633 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
B9HEW3 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 3077F4F705FCE588

FASTA63369,860
        10         20         30         40         50         60 
MWRCVARGLR LPCSTKRSSN DSFRSHISRF FSTDTTGGRS SYTVVDHTYD AVVVGAGGAG 

        70         80         90        100        110        120 
LRAAIGLSEH GFNTACITKL FPTRSHTVAA QGGINAALGN MTEDDWRWHM YDTVKGSDWL 

       130        140        150        160        170        180 
GDQDAIQYMC REAPKAVIEL ENYGLPFSRT EDGKIYQRAF GGQSLDFGKG GQAYRCACAA 

       190        200        210        220        230        240 
DRTGHALLHT LYGQAMKHNT QFFVEYFALD LIMNNDGICQ GVIALNMEDG TLHRFRAAST 

       250        260        270        280        290        300 
ILATGGYGRT YFSATSAHTC TGDGNAMVAR AGIPLEDLEF VQFHPTGIYG AGCLITEGSR 

       310        320        330        340        350        360 
GEGGILRNSE GERFMERYAP TAKDLASRDV VSRSMTMEIR EGRGVGPLKD HIYLHLNHLP 

       370        380        390        400        410        420 
PDVLKERLPG ISETAAIFAG VDVTKEPIPV LPTVHYNMGG IPTNYHGEVV TIKGDDPDAV 

       430        440        450        460        470        480 
IPGLMAAGEA ACASVHGANR LGANSLLDIV VFGRACANRV AEIHRPGKLN KPLEKDAGER 

       490        500        510        520        530        540 
TIARLDKLRN SNGSIPTSQI RLNMQRIMQS NAAVFRTQET LEEGCHLIDK AWESFHDVKV 

       550        560        570        580        590        600 
KDRSLIWNSD LIETVELENL LINACITMHS AEARKESRGA HAREDFTKRD DEKWMKHTLG 

       610        620        630 
YWEKEKVRLD YRPVHMNTLD DEVETFPPKA RVY 

« Hide

References

« Hide 'large scale' references
[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.
[2]US DOE Joint Genome Institute (JGI-PGF)
Grigoriev I.V., Terry A., Salamov A.A., Otillar R., Lou Y., Lucas S., Hammon N., Glavina del Rio T., Detter J., Kalin E., Tice H., Pitluck S., Chapman J., Putnam N.H., Brunner A., Busov V., Campbell M., Chalot M. expand/collapse author list , Covert S., Davis J., DiFazio S., Gribskov M., Gunter L., Hamberger B., Jansson S., Joshi C., Larimer F., Martin F., Napoli C., Nelson D., Ralph S., Rombauts S., Rouze P., Schrader J., Tsai C., Vahala J., Tuskan G., Rokhsar D.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000343 Genomic DNA. Translation: EEE90675.1.
RefSeqXP_002310225.1. XM_002310189.2.

3D structure databases

ProteinModelPortalB9HEW3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING3694.gw1.VII.3485.1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsPOPTR_0007s12750.1; POPTR_0007s12750.1; POPTR_0007s12750.
GeneID7473170.
KEGGpop:POPTR_219180.

Phylogenomic databases

eggNOGCOG1053.
HOGENOMHOG000160475.
KOK00234.
OMAHGQVIIK.
ProtClustDBPLN00128.

Family and domain databases

Gene3D1.20.58.100. 1 hit.
3.90.700.10. 1 hit.
InterProIPR003953. FAD_bind_dom.
IPR003952. FRD_SDH_FAD_BS.
IPR015939. Fum_Rdtase/Succ_DH_flav-like_C.
IPR027477. Succ_DH/fumarate_Rdtase_cat.
IPR011281. Succ_DH_flav_su_fwd.
IPR014006. Succ_Dhase_FrdA_Gneg.
[Graphical view]
PfamPF00890. FAD_binding_2. 1 hit.
PF02910. Succ_DH_flav_C. 1 hit.
[Graphical view]
SUPFAMSSF46977. SSF46977. 1 hit.
SSF56425. SSF56425. 1 hit.
TIGRFAMsTIGR01816. sdhA_forward. 1 hit.
TIGR01812. sdhA_frdA_Gneg. 1 hit.
PROSITEPS00504. FRD_SDH_FAD_BINDING. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9HEW3_POPTR
AccessionPrimary (citable) accession number: B9HEW3
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: April 16, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)