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B9HEW3

- B9HEW3_POPTR

UniProt

B9HEW3 - B9HEW3_POPTR

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Protein
Submitted name: Succinate dehydrogenase flavoprotein subunit
Gene
POPTR_0007s12750g
Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: EnsemblPlants/Gramene
  2. cobalt ion binding Source: EnsemblPlants/Gramene
  3. flavin adenine dinucleotide binding Source: InterPro
  4. oxidoreductase activity, acting on the CH-CH group of donors Source: InterPro

GO - Biological processi

  1. electron transport chain Source: InterPro
  2. tricarboxylic acid cycle Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Succinate dehydrogenase flavoprotein subunitImported
Gene namesi
ORF Names:POPTR_0007s12750gImported
OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
Taxonomic identifieri3694 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
ProteomesiUP000006729: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

  1. cell wall Source: EnsemblPlants/Gramene
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi3694.gw1.VII.3485.1.

Structurei

3D structure databases

ProteinModelPortaliB9HEW3.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1053.
HOGENOMiHOG000160475.
KOiK00234.
OMAiRDGPILQ.

Family and domain databases

Gene3Di1.20.58.100. 1 hit.
3.90.700.10. 1 hit.
InterProiIPR003953. FAD_bind_dom.
IPR003952. FRD_SDH_FAD_BS.
IPR015939. Fum_Rdtase/Succ_DH_flav-like_C.
IPR027477. Succ_DH/fumarate_Rdtase_cat.
IPR011281. Succ_DH_flav_su_fwd.
IPR014006. Succ_Dhase_FrdA_Gneg.
[Graphical view]
PfamiPF00890. FAD_binding_2. 1 hit.
PF02910. Succ_DH_flav_C. 1 hit.
[Graphical view]
SUPFAMiSSF46977. SSF46977. 1 hit.
SSF56425. SSF56425. 1 hit.
TIGRFAMsiTIGR01816. sdhA_forward. 1 hit.
TIGR01812. sdhA_frdA_Gneg. 1 hit.
PROSITEiPS00504. FRD_SDH_FAD_BINDING. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B9HEW3-1 [UniParc]FASTAAdd to Basket

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MWRCVARGLR LPCSTKRSSN DSFRSHISRF FSTDTTGGRS SYTVVDHTYD    50
AVVVGAGGAG LRAAIGLSEH GFNTACITKL FPTRSHTVAA QGGINAALGN 100
MTEDDWRWHM YDTVKGSDWL GDQDAIQYMC REAPKAVIEL ENYGLPFSRT 150
EDGKIYQRAF GGQSLDFGKG GQAYRCACAA DRTGHALLHT LYGQAMKHNT 200
QFFVEYFALD LIMNNDGICQ GVIALNMEDG TLHRFRAAST ILATGGYGRT 250
YFSATSAHTC TGDGNAMVAR AGIPLEDLEF VQFHPTGIYG AGCLITEGSR 300
GEGGILRNSE GERFMERYAP TAKDLASRDV VSRSMTMEIR EGRGVGPLKD 350
HIYLHLNHLP PDVLKERLPG ISETAAIFAG VDVTKEPIPV LPTVHYNMGG 400
IPTNYHGEVV TIKGDDPDAV IPGLMAAGEA ACASVHGANR LGANSLLDIV 450
VFGRACANRV AEIHRPGKLN KPLEKDAGER TIARLDKLRN SNGSIPTSQI 500
RLNMQRIMQS NAAVFRTQET LEEGCHLIDK AWESFHDVKV KDRSLIWNSD 550
LIETVELENL LINACITMHS AEARKESRGA HAREDFTKRD DEKWMKHTLG 600
YWEKEKVRLD YRPVHMNTLD DEVETFPPKA RVY 633
Length:633
Mass (Da):69,860
Last modified:March 24, 2009 - v1
Checksum:i3077F4F705FCE588
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000343 Genomic DNA. Translation: EEE90675.1.
RefSeqiXP_002310225.1. XM_002310189.2.

Genome annotation databases

EnsemblPlantsiPOPTR_0007s12750.1; POPTR_0007s12750.1; POPTR_0007s12750.
GeneIDi7473170.
KEGGipop:POPTR_0007s12750g.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000343 Genomic DNA. Translation: EEE90675.1 .
RefSeqi XP_002310225.1. XM_002310189.2.

3D structure databases

ProteinModelPortali B9HEW3.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3694.gw1.VII.3485.1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi POPTR_0007s12750.1 ; POPTR_0007s12750.1 ; POPTR_0007s12750 .
GeneIDi 7473170.
KEGGi pop:POPTR_0007s12750g.

Phylogenomic databases

eggNOGi COG1053.
HOGENOMi HOG000160475.
KOi K00234.
OMAi RDGPILQ.

Family and domain databases

Gene3Di 1.20.58.100. 1 hit.
3.90.700.10. 1 hit.
InterProi IPR003953. FAD_bind_dom.
IPR003952. FRD_SDH_FAD_BS.
IPR015939. Fum_Rdtase/Succ_DH_flav-like_C.
IPR027477. Succ_DH/fumarate_Rdtase_cat.
IPR011281. Succ_DH_flav_su_fwd.
IPR014006. Succ_Dhase_FrdA_Gneg.
[Graphical view ]
Pfami PF00890. FAD_binding_2. 1 hit.
PF02910. Succ_DH_flav_C. 1 hit.
[Graphical view ]
SUPFAMi SSF46977. SSF46977. 1 hit.
SSF56425. SSF56425. 1 hit.
TIGRFAMsi TIGR01816. sdhA_forward. 1 hit.
TIGR01812. sdhA_frdA_Gneg. 1 hit.
PROSITEi PS00504. FRD_SDH_FAD_BINDING. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
    Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A.
    , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
    Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nisqually.

Entry informationi

Entry nameiB9HEW3_POPTR
AccessioniPrimary (citable) accession number: B9HEW3
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: September 3, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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