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B9HEW3

- B9HEW3_POPTR

UniProt

B9HEW3 - B9HEW3_POPTR

Protein
Submitted name:

Succinate dehydrogenase flavoprotein subunit

Gene

POPTR_0007s12750g

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 41 (01 Oct 2014)
      Sequence version 1 (24 Mar 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: EnsemblPlants/Gramene
    2. cobalt ion binding Source: EnsemblPlants/Gramene
    3. flavin adenine dinucleotide binding Source: InterPro
    4. oxidoreductase activity, acting on the CH-CH group of donors Source: InterPro

    GO - Biological processi

    1. electron transport chain Source: InterPro
    2. tricarboxylic acid cycle Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Succinate dehydrogenase flavoprotein subunitImported
    Gene namesi
    ORF Names:POPTR_0007s12750gImported
    OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
    Taxonomic identifieri3694 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
    ProteomesiUP000006729: Unassembled WGS sequence

    Subcellular locationi

    GO - Cellular componenti

    1. cell wall Source: EnsemblPlants/Gramene

    Interactioni

    Protein-protein interaction databases

    STRINGi3694.gw1.VII.3485.1.

    Structurei

    3D structure databases

    ProteinModelPortaliB9HEW3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1053.
    HOGENOMiHOG000160475.
    KOiK00234.
    OMAiRDGPILQ.

    Family and domain databases

    Gene3Di1.20.58.100. 1 hit.
    3.90.700.10. 1 hit.
    InterProiIPR003953. FAD_bind_dom.
    IPR003952. FRD_SDH_FAD_BS.
    IPR015939. Fum_Rdtase/Succ_DH_flav-like_C.
    IPR027477. Succ_DH/fumarate_Rdtase_cat.
    IPR011281. Succ_DH_flav_su_fwd.
    IPR014006. Succ_Dhase_FrdA_Gneg.
    [Graphical view]
    PfamiPF00890. FAD_binding_2. 1 hit.
    PF02910. Succ_DH_flav_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF46977. SSF46977. 1 hit.
    SSF56425. SSF56425. 1 hit.
    TIGRFAMsiTIGR01816. sdhA_forward. 1 hit.
    TIGR01812. sdhA_frdA_Gneg. 1 hit.
    PROSITEiPS00504. FRD_SDH_FAD_BINDING. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B9HEW3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MWRCVARGLR LPCSTKRSSN DSFRSHISRF FSTDTTGGRS SYTVVDHTYD    50
    AVVVGAGGAG LRAAIGLSEH GFNTACITKL FPTRSHTVAA QGGINAALGN 100
    MTEDDWRWHM YDTVKGSDWL GDQDAIQYMC REAPKAVIEL ENYGLPFSRT 150
    EDGKIYQRAF GGQSLDFGKG GQAYRCACAA DRTGHALLHT LYGQAMKHNT 200
    QFFVEYFALD LIMNNDGICQ GVIALNMEDG TLHRFRAAST ILATGGYGRT 250
    YFSATSAHTC TGDGNAMVAR AGIPLEDLEF VQFHPTGIYG AGCLITEGSR 300
    GEGGILRNSE GERFMERYAP TAKDLASRDV VSRSMTMEIR EGRGVGPLKD 350
    HIYLHLNHLP PDVLKERLPG ISETAAIFAG VDVTKEPIPV LPTVHYNMGG 400
    IPTNYHGEVV TIKGDDPDAV IPGLMAAGEA ACASVHGANR LGANSLLDIV 450
    VFGRACANRV AEIHRPGKLN KPLEKDAGER TIARLDKLRN SNGSIPTSQI 500
    RLNMQRIMQS NAAVFRTQET LEEGCHLIDK AWESFHDVKV KDRSLIWNSD 550
    LIETVELENL LINACITMHS AEARKESRGA HAREDFTKRD DEKWMKHTLG 600
    YWEKEKVRLD YRPVHMNTLD DEVETFPPKA RVY 633
    Length:633
    Mass (Da):69,860
    Last modified:March 24, 2009 - v1
    Checksum:i3077F4F705FCE588
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000343 Genomic DNA. Translation: EEE90675.1.
    RefSeqiXP_002310225.1. XM_002310189.2.

    Genome annotation databases

    EnsemblPlantsiPOPTR_0007s12750.1; POPTR_0007s12750.1; POPTR_0007s12750.
    GeneIDi7473170.
    KEGGipop:POPTR_0007s12750g.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000343 Genomic DNA. Translation: EEE90675.1 .
    RefSeqi XP_002310225.1. XM_002310189.2.

    3D structure databases

    ProteinModelPortali B9HEW3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3694.gw1.VII.3485.1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi POPTR_0007s12750.1 ; POPTR_0007s12750.1 ; POPTR_0007s12750 .
    GeneIDi 7473170.
    KEGGi pop:POPTR_0007s12750g.

    Phylogenomic databases

    eggNOGi COG1053.
    HOGENOMi HOG000160475.
    KOi K00234.
    OMAi RDGPILQ.

    Family and domain databases

    Gene3Di 1.20.58.100. 1 hit.
    3.90.700.10. 1 hit.
    InterProi IPR003953. FAD_bind_dom.
    IPR003952. FRD_SDH_FAD_BS.
    IPR015939. Fum_Rdtase/Succ_DH_flav-like_C.
    IPR027477. Succ_DH/fumarate_Rdtase_cat.
    IPR011281. Succ_DH_flav_su_fwd.
    IPR014006. Succ_Dhase_FrdA_Gneg.
    [Graphical view ]
    Pfami PF00890. FAD_binding_2. 1 hit.
    PF02910. Succ_DH_flav_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF46977. SSF46977. 1 hit.
    SSF56425. SSF56425. 1 hit.
    TIGRFAMsi TIGR01816. sdhA_forward. 1 hit.
    TIGR01812. sdhA_frdA_Gneg. 1 hit.
    PROSITEi PS00504. FRD_SDH_FAD_BINDING. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
      Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A.
      , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
      Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. NisquallyImported.

    Entry informationi

    Entry nameiB9HEW3_POPTR
    AccessioniPrimary (citable) accession number: B9HEW3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 24, 2009
    Last sequence update: March 24, 2009
    Last modified: October 1, 2014
    This is version 41 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3