Skip Header

Contribute Send feedback
Read comments (?) or add your own

B9HC41 (B9HC41_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
Predicted protein EMBL EEE91703.1
Gene names
ORF Names:POPTRDRAFT_819183 EMBL EEE91703.1
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]
Taxonomic identifier3694 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length361 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

Sequence LengthMass (Da)Tools
B9HC41 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: D8DF129D74C60609

FASTA36139,588
        10         20         30         40         50         60 
MKALILVGGF GTRLRPLTLS VPKPLVDFAN KPMILHQIEA LKAIGVTEVV LAINYQPEVM 

        70         80         90        100        110        120 
LNFLKEYEKR LEIKITCSQE TEPLGTAGPL ALARDKLIDD SGAPFFVLNS DVISEYPLKQ 

       130        140        150        160        170        180 
MIEFHKGHGG EASIMVTKVD EPSKYGVVLM EETSGKVEKF VEKPKIFVGN KINAGIYLLN 

       190        200        210        220        230        240 
PSVLDRIELR PTSIEKEVFP KIAAENKLFA MVLPGFWMDI GQPKDYVTGL RLYLDSLRKM 

       250        260        270        280        290        300 
SSPKLATGPN IVGNVLVDES AVIGEGCLIG PDVAIGPGCI IDSGVRLSRC TVMRGVRIKK 

       310        320        330        340        350        360 
HACISSSIIG WHSTVGRWAR IENMTILGED VHVSDEVYSN GGVVLPHKEI KSSILKPEIV 


M

« Hide

References

[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CM000342 Genomic DNA. Translation: EEE91703.1.
RefSeqXP_002308180.1. XM_002308144.1.

3D structure databases

ProteinModelPortalB9HC41.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsPOPTR_0006s09130.1; POPTR_0006s09130.1; POPTR_0006s09130.
GeneID7487278.
KEGGpop:POPTR_819183.

Phylogenomic databases

GeneTreeEPGT00070000028804.
OMAHETAVIG.
PhylomeDBB9HC41.
ProtClustDBCLSN2682462.

Family and domain databases

InterProIPR001451. Hexapep_transf.
IPR005835. NTP_transferase.
[Graphical view]
KOK00966.
PfamPF00132. Hexapep. 1 hit.
PF00483. NTP_transferase. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9HC41_POPTR
AccessionPrimary (citable) accession number: B9HC41
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: January 25, 2012
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info