Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Legumin family protein

Gene

POPTR_0005s24610g

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Seed storage proteinUniRule annotation, Storage protein

Names & Taxonomyi

Protein namesi
Submitted name:
Legumin family proteinImported
Gene namesi
ORF Names:POPTR_0005s24610gImported
OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
Taxonomic identifieri3694 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
Proteomesi
  • UP000006729 Componenti: Linkage group LGV

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2525Sequence analysisAdd
BLAST
Chaini26 – 479454Sequence analysisPRO_5002885223Add
BLAST

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini43 – 251209Cupin_1InterPro annotationAdd
BLAST
Domaini305 – 454150Cupin_1InterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG410IHSE. Eukaryota.
ENOG410YATH. LUCA.
HOGENOMiHOG000217279.
InParanoidiB9H8M5.
OMAiWNINAHA.

Family and domain databases

Gene3Di2.60.120.10. 2 hits.
InterProiIPR022379. 11S_seedstore_CS.
IPR006044. 11S_seedstore_pln.
IPR006045. Cupin_1.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 2 hits.
[Graphical view]
PRINTSiPR00439. 11SGLOBULIN.
SMARTiSM00835. Cupin_1. 2 hits.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 2 hits.
PROSITEiPS00305. 11S_SEED_STORAGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B9H8M5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPFMAKTNVL LSFSLFLVLF HGSLGLTADR SRQHQGQCQL DRLNALKPGN
60 70 80 90 100
RIKSEAGETE SWDPNHDQFQ CAGVAVVRRT IEPNGLLLPS YSNAPQLVYI
110 120 130 140 150
VQGRGMTGTL MPGCPETFQE SQESQGQGRR RLQDQHQKVH RFREGDVIAL
160 170 180 190 200
PAGVAHWCYN DGKERVIAVT VLDMANSANQ LDDMNPRNFY LAGNPQEEFQ
210 220 230 240 250
QVQGQPRHRG EQRTGREPFR GHGQQQCNNI FCGMDTRFLA EAFNVSEQVA
260 270 280 290 300
KKLQSESDRR GNIVRVKGGL QIVMPPLRQE EQEQGQRGEH RNGLEETMCT
310 320 330 340 350
MRIRENIGDP SRADVFTPEA GRISTVNSHN LPILRYIQLS AERGVLYNEA
360 370 380 390 400
MMMPHWNLNA HSIMYAIRGQ AHVQVVDHSG RTVFDGEMRE GQVLTVPQNF
410 420 430 440 450
AVVKRSDQQS FEWVSFKTND NAMISPLAGR TSALRAMPAE VLASAFRISV
460 470
EDAKRIKFER QETTLTSHRS TRSGSWAEA
Length:479
Mass (Da):53,952
Last modified:December 11, 2013 - v2
Checksum:i68DBA68B2BCEC482
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000341 Genomic DNA. Translation: EEE94641.2.
RefSeqiXP_002307645.2. XM_002307609.2.

Genome annotation databases

EnsemblPlantsiPOPTR_0005s24610.1; POPTR_0005s24610.1; POPTR_0005s24610.
GeneIDi7454345.
GrameneiPOPTR_0005s24610.1; POPTR_0005s24610.1; POPTR_0005s24610.
KEGGipop:POPTR_0005s24610g.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000341 Genomic DNA. Translation: EEE94641.2.
RefSeqiXP_002307645.2. XM_002307609.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiPOPTR_0005s24610.1; POPTR_0005s24610.1; POPTR_0005s24610.
GeneIDi7454345.
GrameneiPOPTR_0005s24610.1; POPTR_0005s24610.1; POPTR_0005s24610.
KEGGipop:POPTR_0005s24610g.

Phylogenomic databases

eggNOGiENOG410IHSE. Eukaryota.
ENOG410YATH. LUCA.
HOGENOMiHOG000217279.
InParanoidiB9H8M5.
OMAiWNINAHA.

Family and domain databases

Gene3Di2.60.120.10. 2 hits.
InterProiIPR022379. 11S_seedstore_CS.
IPR006044. 11S_seedstore_pln.
IPR006045. Cupin_1.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF00190. Cupin_1. 2 hits.
[Graphical view]
PRINTSiPR00439. 11SGLOBULIN.
SMARTiSM00835. Cupin_1. 2 hits.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 2 hits.
PROSITEiPS00305. 11S_SEED_STORAGE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
    Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A.
    , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
    Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NisquallyImported.

Entry informationi

Entry nameiB9H8M5_POPTR
AccessioniPrimary (citable) accession number: B9H8M5
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: December 11, 2013
Last modified: February 17, 2016
This is version 47 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.