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B9H7G3 (B9H7G3_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length488 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequences

Sequence LengthMass (Da)Tools
B9H7G3 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 99ECF97E975294F9

FASTA48853,495
        10         20         30         40         50         60 
MATKEEENTV FDVEAANVLT KELRDVFASG KTRSYEWRIS QLKSIVKMCD EHEEDIVDAL 

        70         80         90        100        110        120 
RQDLSKPQLE SIVYELTMVK NSCTLAIKEL KHWMMPEKAK TSLTTFPSSA EIVSEPLGAV 

       130        140        150        160        170        180 
LIISAWNYPF LLSMDPLIGA IAAGNAMVLK PSEVAPATSS LLAKLLPEYL DCSSIKVVEG 

       190        200        210        220        230        240 
AVSETSALLE QKWDKIFYTG NGRVGRIVMA AAAKHLTPVV LELGGKSPVV VDSGIDIQIA 

       250        260        270        280        290        300 
TRRIIVGKWG CNNGQACISP DYIITTKDCA EKLVDSLKKE LEAFYGKNPL ESKDLSRIVN 

       310        320        330        340        350        360 
SNHFSRLTKL LDEDKVSGKI VYGGERDEAN LRIAPTILLG VPQNSLIMKE EIFGPLLPIL 

       370        380        390        400        410        420 
TVSKIEDSFD IIKSGTKPLA AYLFTNNKKL KEQFLMSVSA GGVVINDTTL HLAVHSVPFG 

       430        440        450        460        470        480 
GVGESGMGSY HGKFSFDAFT HKKAVVYRSF VGDASVRYPP YTLGKLRLMK ALITGNVWTI 


LRTLLGMS 

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References

« Hide 'large scale' references
[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.
[2]US DOE Joint Genome Institute (JGI-PGF)
Grigoriev I.V., Terry A., Salamov A.A., Otillar R., Lou Y., Lucas S., Hammon N., Glavina del Rio T., Detter J., Kalin E., Tice H., Pitluck S., Chapman J., Putnam N.H., Brunner A., Busov V., Campbell M., Chalot M. expand/collapse author list , Covert S., Davis J., DiFazio S., Gribskov M., Gunter L., Hamberger B., Jansson S., Joshi C., Larimer F., Martin F., Napoli C., Nelson D., Ralph S., Rombauts S., Rouze P., Schrader J., Tsai C., Vahala J., Tuskan G., Rokhsar D.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000341 Genomic DNA. Translation: EEE93637.1.
RefSeqXP_002306641.1. XM_002306605.2.

3D structure databases

ProteinModelPortalB9H7G3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING3694.estExt_fgenesh4_pm.C_LG_V0365.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsPOPTR_0005s20150.1; POPTR_0005s20150.1; POPTR_0005s20150.
GeneID7460961.
KEGGpop:POPTR_0005s20150g.

Phylogenomic databases

eggNOGCOG1012.
HOGENOMHOG000271515.
KOK00128.
OMADIFTHRR.

Family and domain databases

Gene3D3.40.309.10. 1 hit.
3.40.605.10. 1 hit.
InterProIPR016161. Ald_DH/histidinol_DH.
IPR016163. Ald_DH_C.
IPR029510. Ald_DH_CS_GLU.
IPR016162. Ald_DH_N.
IPR015590. Aldehyde_DH_dom.
IPR012394. Aldehyde_DH_NAD(P).
[Graphical view]
PfamPF00171. Aldedh. 1 hit.
[Graphical view]
PIRSFPIRSF036492. ALDH. 1 hit.
SUPFAMSSF53720. SSF53720. 1 hit.
PROSITEPS00687. ALDEHYDE_DEHYDR_GLU. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9H7G3_POPTR
AccessionPrimary (citable) accession number: B9H7G3
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: June 11, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)