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B9H5P7 (B9H5P7_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length457 AA.
Sequence statusComplete.
Protein existenceInferred from homology

Sequences

Sequence LengthMass (Da)Tools
B9H5P7 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 9FA9241C57DA932C

FASTA45748,708
        10         20         30         40         50         60 
MASRASRRLL KDFLLKRVTS TPVSSVRHFS SSSSSETAPK IPHFSKKGRL LTGATIGLVI 

        70         80         90        100        110        120 
AGGAYVSTVD EATFCGWLFN ATKLVNPFFA LLDAEFAHKL AVSAAARGWV PREKRPDPSV 

       130        140        150        160        170        180 
LGLEVWGRKF SNPIGLAAGF DKNAEAIDGL LGLGFGFVEV GSVTPVPQEG NPKPRIFRLR 

       190        200        210        220        230        240 
QEGAIINRCG FNSEGIVAVA KRLGAQHGKR KLDETSSASS TSNNDVKHGG KAGPGILGVN 

       250        260        270        280        290        300 
LGKNKTSEDA AADYVQGVHS LSQYSDYLVI NVSSPNTPGL RMLQGRKQLK DLVKKVQAAR 

       310        320        330        340        350        360 
DEMQWGEEGP PPLLVKIAPD LSKEDLEDIA AVALALRLDG LIISNTTISR PDSVNKSPVA 

       370        380        390        400        410        420 
EETGGLSGKP LLNLSTNILK EMFILTRGKI PLIGCGGVFS GEDAYKKVRA GATLVQLYTG 

       430        440        450 
FAYGGPALIP RIKAELAECL ERDGFKSISE AVGADYR 

« Hide

References

« Hide 'large scale' references
[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.
[2]US DOE Joint Genome Institute (JGI-PGF)
Grigoriev I.V., Terry A., Salamov A.A., Otillar R., Lou Y., Lucas S., Hammon N., Glavina del Rio T., Detter J., Kalin E., Tice H., Pitluck S., Chapman J., Putnam N.H., Brunner A., Busov V., Campbell M., Chalot M. expand/collapse author list , Covert S., Davis J., DiFazio S., Gribskov M., Gunter L., Hamberger B., Jansson S., Joshi C., Larimer F., Martin F., Napoli C., Nelson D., Ralph S., Rombauts S., Rouze P., Schrader J., Tsai C., Vahala J., Tuskan G., Rokhsar D.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000341 Genomic DNA. Translation: EEE93370.1.
RefSeqXP_002306374.1. XM_002306338.2.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING3694.estExt_fgenesh4_pg.C_LG_V0296.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsPOPTR_0005s09200.1; POPTR_0005s09200.1; POPTR_0005s09200.
GeneID7486362.
KEGGpop:POPTR_0005s09200g.

Phylogenomic databases

eggNOGCOG0167.
HOGENOMHOG000225103.
KOK00254.
OMAPEEYAYF.

Family and domain databases

Gene3D3.20.20.70. 1 hit.
HAMAPMF_00225. DHO_dh_type2.
InterProIPR013785. Aldolase_TIM.
IPR012135. Dihydroorotate_DH_1_2.
IPR005719. Dihydroorotate_DH_2.
IPR001295. Dihydroorotate_DH_CS.
[Graphical view]
PfamPF01180. DHO_dh. 1 hit.
[Graphical view]
TIGRFAMsTIGR01036. pyrD_sub2. 1 hit.
PROSITEPS00911. DHODEHASE_1. 1 hit.
PS00912. DHODEHASE_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9H5P7_POPTR
AccessionPrimary (citable) accession number: B9H5P7
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: May 14, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)