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B9H5P7

- B9H5P7_POPTR

UniProt

B9H5P7 - B9H5P7_POPTR

Protein
Submitted name:

Uncharacterized protein

Gene

POPTR_0005s09200g

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
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    • History
      Entry version 40 (01 Oct 2014)
      Sequence version 1 (24 Mar 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. dihydroorotate oxidase activity Source: InterPro

    GO - Biological processi

    1. 'de novo' pyrimidine nucleobase biosynthetic process Source: InterPro
    2. UMP biosynthetic process Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    ORF Names:POPTR_0005s09200gImported
    OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
    Taxonomic identifieri3694 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
    ProteomesiUP000006729: Unassembled WGS sequence

    Subcellular locationi

    GO - Cellular componenti

    1. membrane Source: InterPro

    Interactioni

    Protein-protein interaction databases

    STRINGi3694.estExt_fgenesh4_pg.C_LG_V0296.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG0167.
    HOGENOMiHOG000225103.
    KOiK00254.
    OMAiPEEYAYF.

    Family and domain databases

    Gene3Di3.20.20.70. 1 hit.
    HAMAPiMF_00225. DHO_dh_type2.
    InterProiIPR013785. Aldolase_TIM.
    IPR012135. Dihydroorotate_DH_1_2.
    IPR005719. Dihydroorotate_DH_2.
    IPR001295. Dihydroorotate_DH_CS.
    [Graphical view]
    PfamiPF01180. DHO_dh. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR01036. pyrD_sub2. 1 hit.
    PROSITEiPS00911. DHODEHASE_1. 1 hit.
    PS00912. DHODEHASE_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B9H5P7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MASRASRRLL KDFLLKRVTS TPVSSVRHFS SSSSSETAPK IPHFSKKGRL    50
    LTGATIGLVI AGGAYVSTVD EATFCGWLFN ATKLVNPFFA LLDAEFAHKL 100
    AVSAAARGWV PREKRPDPSV LGLEVWGRKF SNPIGLAAGF DKNAEAIDGL 150
    LGLGFGFVEV GSVTPVPQEG NPKPRIFRLR QEGAIINRCG FNSEGIVAVA 200
    KRLGAQHGKR KLDETSSASS TSNNDVKHGG KAGPGILGVN LGKNKTSEDA 250
    AADYVQGVHS LSQYSDYLVI NVSSPNTPGL RMLQGRKQLK DLVKKVQAAR 300
    DEMQWGEEGP PPLLVKIAPD LSKEDLEDIA AVALALRLDG LIISNTTISR 350
    PDSVNKSPVA EETGGLSGKP LLNLSTNILK EMFILTRGKI PLIGCGGVFS 400
    GEDAYKKVRA GATLVQLYTG FAYGGPALIP RIKAELAECL ERDGFKSISE 450
    AVGADYR 457
    Length:457
    Mass (Da):48,708
    Last modified:March 24, 2009 - v1
    Checksum:i9FA9241C57DA932C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000341 Genomic DNA. Translation: EEE93370.1.
    RefSeqiXP_002306374.1. XM_002306338.2.

    Genome annotation databases

    EnsemblPlantsiPOPTR_0005s09200.1; POPTR_0005s09200.1; POPTR_0005s09200.
    GeneIDi7486362.
    KEGGipop:POPTR_0005s09200g.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000341 Genomic DNA. Translation: EEE93370.1 .
    RefSeqi XP_002306374.1. XM_002306338.2.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3694.estExt_fgenesh4_pg.C_LG_V0296.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi POPTR_0005s09200.1 ; POPTR_0005s09200.1 ; POPTR_0005s09200 .
    GeneIDi 7486362.
    KEGGi pop:POPTR_0005s09200g.

    Phylogenomic databases

    eggNOGi COG0167.
    HOGENOMi HOG000225103.
    KOi K00254.
    OMAi PEEYAYF.

    Family and domain databases

    Gene3Di 3.20.20.70. 1 hit.
    HAMAPi MF_00225. DHO_dh_type2.
    InterProi IPR013785. Aldolase_TIM.
    IPR012135. Dihydroorotate_DH_1_2.
    IPR005719. Dihydroorotate_DH_2.
    IPR001295. Dihydroorotate_DH_CS.
    [Graphical view ]
    Pfami PF01180. DHO_dh. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR01036. pyrD_sub2. 1 hit.
    PROSITEi PS00911. DHODEHASE_1. 1 hit.
    PS00912. DHODEHASE_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
      Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A.
      , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
      Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. NisquallyImported.

    Entry informationi

    Entry nameiB9H5P7_POPTR
    AccessioniPrimary (citable) accession number: B9H5P7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 24, 2009
    Last sequence update: March 24, 2009
    Last modified: October 1, 2014
    This is version 40 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3