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B9H5P7

- B9H5P7_POPTR

UniProt

B9H5P7 - B9H5P7_POPTR

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Protein
Submitted name:

Uncharacterized protein

Gene

POPTR_0005s09200g

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. dihydroorotate dehydrogenase activity Source: InterPro

GO - Biological processi

  1. 'de novo' pyrimidine nucleobase biosynthetic process Source: InterPro
  2. UMP biosynthetic process Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:POPTR_0005s09200gImported
OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
Taxonomic identifieri3694 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
ProteomesiUP000006729: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

  1. membrane Source: InterPro
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi3694.estExt_fgenesh4_pg.C_LG_V0296.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0167.
HOGENOMiHOG000225103.
InParanoidiB9H5P7.
KOiK00254.
OMAiPEEYAYF.

Family and domain databases

Gene3Di3.20.20.70. 1 hit.
HAMAPiMF_00225. DHO_dh_type2.
InterProiIPR013785. Aldolase_TIM.
IPR012135. Dihydroorotate_DH_1_2.
IPR005719. Dihydroorotate_DH_2.
IPR001295. Dihydroorotate_DH_CS.
[Graphical view]
PfamiPF01180. DHO_dh. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01036. pyrD_sub2. 1 hit.
PROSITEiPS00911. DHODEHASE_1. 1 hit.
PS00912. DHODEHASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B9H5P7-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MASRASRRLL KDFLLKRVTS TPVSSVRHFS SSSSSETAPK IPHFSKKGRL
60 70 80 90 100
LTGATIGLVI AGGAYVSTVD EATFCGWLFN ATKLVNPFFA LLDAEFAHKL
110 120 130 140 150
AVSAAARGWV PREKRPDPSV LGLEVWGRKF SNPIGLAAGF DKNAEAIDGL
160 170 180 190 200
LGLGFGFVEV GSVTPVPQEG NPKPRIFRLR QEGAIINRCG FNSEGIVAVA
210 220 230 240 250
KRLGAQHGKR KLDETSSASS TSNNDVKHGG KAGPGILGVN LGKNKTSEDA
260 270 280 290 300
AADYVQGVHS LSQYSDYLVI NVSSPNTPGL RMLQGRKQLK DLVKKVQAAR
310 320 330 340 350
DEMQWGEEGP PPLLVKIAPD LSKEDLEDIA AVALALRLDG LIISNTTISR
360 370 380 390 400
PDSVNKSPVA EETGGLSGKP LLNLSTNILK EMFILTRGKI PLIGCGGVFS
410 420 430 440 450
GEDAYKKVRA GATLVQLYTG FAYGGPALIP RIKAELAECL ERDGFKSISE

AVGADYR
Length:457
Mass (Da):48,708
Last modified:March 24, 2009 - v1
Checksum:i9FA9241C57DA932C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000341 Genomic DNA. Translation: EEE93370.1.
RefSeqiXP_002306374.1. XM_002306338.2.

Genome annotation databases

EnsemblPlantsiPOPTR_0005s09200.1; POPTR_0005s09200.1; POPTR_0005s09200.
GeneIDi7486362.
KEGGipop:POPTR_0005s09200g.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000341 Genomic DNA. Translation: EEE93370.1 .
RefSeqi XP_002306374.1. XM_002306338.2.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3694.estExt_fgenesh4_pg.C_LG_V0296.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi POPTR_0005s09200.1 ; POPTR_0005s09200.1 ; POPTR_0005s09200 .
GeneIDi 7486362.
KEGGi pop:POPTR_0005s09200g.

Phylogenomic databases

eggNOGi COG0167.
HOGENOMi HOG000225103.
InParanoidi B9H5P7.
KOi K00254.
OMAi PEEYAYF.

Family and domain databases

Gene3Di 3.20.20.70. 1 hit.
HAMAPi MF_00225. DHO_dh_type2.
InterProi IPR013785. Aldolase_TIM.
IPR012135. Dihydroorotate_DH_1_2.
IPR005719. Dihydroorotate_DH_2.
IPR001295. Dihydroorotate_DH_CS.
[Graphical view ]
Pfami PF01180. DHO_dh. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR01036. pyrD_sub2. 1 hit.
PROSITEi PS00911. DHODEHASE_1. 1 hit.
PS00912. DHODEHASE_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
    Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A.
    , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
    Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NisquallyImported.

Entry informationi

Entry nameiB9H5P7_POPTR
AccessioniPrimary (citable) accession number: B9H5P7
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: October 29, 2014
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3