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B9H1J0 (B9H1J0_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Predicted protein EMBL EEE86035.1
Gene names
ORF Names:POPTRDRAFT_818203 EMBL EEE86035.1
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]
Taxonomic identifier3694 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length386 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. RuleBase RU003719

Sequences

Sequence LengthMass (Da)Tools
B9H1J0 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 9D1935012F4243AB

FASTA38641,961
        10         20         30         40         50         60 
MAKPISIEVY NPNGKYRVVS TKSMPGTRWI NLLIEQDCRV EICTQQKTIL SVEDIIALIG 

        70         80         90        100        110        120 
DKCDGVIGQL TEDWGETLFA ALSRAGGKAF SNMAVGYNNV DVNAANKHGV AVGNTPGVLT 

       130        140        150        160        170        180 
ETTAELAASL SLAAARRIVE ADQFMRAGLY DGWLPHLFVG NLLKGQTVGV IGAGRIGSAY 

       190        200        210        220        230        240 
ARMMVEGFKM NLIYYDLYQS TRLEKFVTAY GEFLKANGEQ PVTWKRAASM DEVLREADVI 

       250        260        270        280        290        300 
SLHPILDKTT YHLINKESLA TMKKEAILVN CSRGPVVDEV ALVEHLKQNP MFRVGLDVFE 

       310        320        330        340        350        360 
DEPYMKPGLA DMKNAVVVPH IASASKWTRE GMATLAALNV LGKIKGYPVW GDPNRVAPFL 

       370        380 
NENAPPPAAS PSIVNAKALG LPVSKL

« Hide

References

[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CM000340 Genomic DNA. Translation: EEE86035.1.
RefSeqXP_002305524.1. XM_002305488.1.
UniGenePth.4725.

3D structure databases

ProteinModelPortalB9H1J0.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7453649.
KEGGpop:POPTR_818203.

Phylogenomic databases

GeneTreeEPGT00070000031295.
OMAASHETRS.
ProtClustDBPLN02306.

Family and domain databases

InterProIPR006139. D-isomer_2_OHA_DH_cat_dom.
IPR006140. D-isomer_2_OHA_DH_NAD-bd.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
Gene3DG3DSA:3.40.50.720. NAD(P)-bd. 2 hits.
PfamPF00389. 2-Hacid_dh. 1 hit.
PF02826. 2-Hacid_dh_C. 1 hit.
[Graphical view]
PROSITEPS00065. D_2_HYDROXYACID_DH_1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9H1J0_POPTR
AccessionPrimary (citable) accession number: B9H1J0
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: December 14, 2011
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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