B9H0Y5 (B9H0Y5_POPTR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Arginine decarboxylase RuleBase RU003740
EC=4.1.1.19 RuleBase RU003740

Gene names

ORF Names:

POPTRDRAFT_713160 EMBL EEE86652.1

Organism

Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]

Taxonomic identifier

3694 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length	730 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-arginine = agmatine + CO2. RuleBase RU003740
Cofactor	Magnesium By similarity. RuleBase RU003740
Sequence similarities	Belongs to the Orn/Lys/Arg decarboxylase class-II family. RuleBase RU003737

Ontologies

Keywords
Biological process	Spermidine biosynthesis RuleBase RU003740
Molecular function	Decarboxylase RuleBase RU003740 Lyase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	arginine catabolic process Inferred from electronic annotation. Source: InterPro spermidine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	arginine decarboxylase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B9H0Y5 [UniParc]. Last modified March 24, 2009. Version 1. Checksum: 33A40B1CCC85CE4A	FASTA	730	78,782
	10 20 30 40 50 60 MPALACCVDA AHAPPGYAFP AGDSSLPFPV PCSPGVPLST TSTHTAAASE NSSAHWSPSL 70 80 90 100 110 120 SAALYKIDGW GAPYFSVNSS GNVSARPYGT DTLPHQEIDL LKIVKKVSDP KWVGGLGLQL 130 140 150 160 170 180 PVIVRLPDVL KNRLESLQSA FDFAIQSQVY EAHYQGVYPV KCNQDRFVVE DIVRFGSPFR 190 200 210 220 230 240 FGLEAGSKPE LLLAMSCLCK GNPEALLICN GFKDGEYISL ALIARKLALN TVIVLEQEEE 250 260 270 280 290 300 IDLVIELSKK MSVRPVVGVR AKLRTKHSGH FGSTSGEKGK FGLTTTQILR VVKKLEQAGM 310 320 330 340 350 360 LDCFQLLHFH IGSQIPSTSL LADGVSEAAQ IYCELVRLGA RMQVIDIGGG LGIDYDGSKS 370 380 390 400 410 420 GNSDLSVAYG LEEYALAVVQ AVKFVCDRKN VKHPVICSES GRAIVSHHSI LIFEAISSSS 430 440 450 460 470 480 TSAASMTSYE MQYYLGGLTE DARADYRNLT ASAIRGEHEA CLLYADQLKQ SCVDQFKEGN 490 500 510 520 530 540 IGMEQLAAVD ALCELFYKTI GASDPVRTYH VNLSLFTSIP DFWGIGQLFP IVPIHRLDQR 550 560 570 580 590 600 PGARGILSDL TCDSDGKIDK FIGGESSLPL HEIEGGGAGG NGGKYYLGMF LGGAYEEALG 610 620 630 640 650 660 GIHNLFGGPS VVRVSQSDGP HSFLVTQAVP GPSCGDVLRV MQHEPELMFE TLKHRVEEYC 670 680 690 700 710 720 HHDEDSDDGD SDHGMGSIAS LANRLASYFH NMPYLVAPCS VTAMNNSGFY YCNEDDYNAA 730 ADTSPCEDEK

References

[1]

"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)." Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S. Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nisqually.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000340 Genomic DNA. Translation: EEE86652.1.
RefSeq	XP_002306141.1. XM_002306105.1.
UniGene	Pth.11012.
3D structure databases
ProteinModelPortal	B9H0Y5.
ModBase	Search...
Protein-protein interaction databases
STRING	B9H0Y5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	POPTR_0004s17020.1; POPTR_0004s17020.1; POPTR_0004s17020.
GeneID	7453603.
KEGG	pop:POPTR_713160.
Phylogenomic databases
GeneTree	EPGT00050000019086.
OMA	LICNGYK.
PhylomeDB	B9H0Y5.
ProtClustDB	PLN02439.
Family and domain databases
InterPro	IPR009006. Ala_racemase/Decarboxylase_C. IPR002985. Arg_decrbxlase. IPR022643. De-COase2_C. IPR022657. De-COase2_CS. IPR022644. De-COase2_N. IPR022653. De-COase2_pyr-phos_BS. IPR000183. Orn/DAP/Arg_de-COase. [Graphical view]
Gene3D	G3DSA:2.40.37.10. Ala_racemase/Decarboxylase_C. 2 hits.
KO	K01583.
PANTHER	PTHR11482:SF3. Arg_decrbxlase. 1 hit.
Pfam	PF02784. Orn_Arg_deC_N. 1 hit. PF00278. Orn_DAP_Arg_deC. 1 hit. [Graphical view]
PIRSF	PIRSF001336. Arg_decrbxlase. 1 hit.
PRINTS	PR01180. ARGDCRBXLASE. PR01179. ODADCRBXLASE.
TIGRFAMs	TIGR01273. SpeA. 1 hit.
PROSITE	PS00878. ODR_DC_2_1. 1 hit. PS00879. ODR_DC_2_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B9H0Y5_POPTR

Accession

Primary (citable) accession number: B9H0Y5

Entry history

Integrated into UniProtKB/TrEMBL:	March 24, 2009
Last sequence update:	March 24, 2009
Last modified:	December 14, 2011
This is version 21 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)