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Protein
Submitted name:

PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 family protein

Gene

POPTR_0003s01670g

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Submitted name:
PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 family proteinImported
Gene namesi
ORF Names:POPTR_0003s01670gImported
OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
Taxonomic identifieri3694 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
Proteomesi
  • UP000006729 Componenti: Linkage group LGIII

Interactioni

Protein-protein interaction databases

STRINGi3694.POPTR_0003s01670.1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini144 – 309Helicase ATP-bindingInterPro annotationAdd BLAST166
Domaini677 – 827Helicase C-terminalInterPro annotationAdd BLAST151
Domaini1277 – 1331Myb-likeInterPro annotationAdd BLAST55

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili1068 – 1091Sequence analysisAdd BLAST24

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG0388. Eukaryota.
ENOG410XP0A. LUCA.
HOGENOMiHOG000083197.
InParanoidiB9GZR8.
KOiK11320.
OMAiFTHLDFN.
OrthoDBiEOG093600BW.

Family and domain databases

InterProiView protein in InterPro
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR017877. Myb-like_dom.
IPR027417. P-loop_NTPase.
IPR000330. SNF2_N.
PfamiView protein in Pfam
PF00271. Helicase_C. 1 hit.
PF00176. SNF2_N. 1 hit.
SMARTiView protein in SMART
SM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
SUPFAMiSSF52540. SSF52540. 3 hits.
PROSITEiView protein in PROSITE
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS50090. MYB_LIKE. 1 hit.

Sequencei

Sequence statusi: Complete.

B9GZR8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAANSQILLL QKESEIPLEE LLARYTKEPN SEVSEDESEY APVLSDNMSN
60 70 80 90 100
SPGHEEELKQ LDNSMDEMVE HGEHPLVEEQ EKGNEEISEE GRESESKIAD
110 120 130 140 150
AAAAARSAQP TGNTFSTTKV RTKFPFLLKY PLREYQHIGL DWLVTMYEQR
160 170 180 190 200
LNGILADEMG LGKTIMTIAL LAHLACEKGI WGPHLIVVPT SVMLNWETEF
210 220 230 240 250
LKWCPAFKIL TYFGSAKERK CKRQGWLKPN FFHVCITTYR LVIQDSKVFK
260 270 280 290 300
RKKWKYLILD EAHLIKNWKS QRWQTLLNFN SKRRILLTGT PLQNDLMELW
310 320 330 340 350
SLMHFLMPHI FQSHQEFKDW FSNPITGMVE GQERVNKEVV DRLHNVLRPF
360 370 380 390 400
ILRRLKRDVE KQLPMKVEHV IFCRLSRRQR NLYEDFIASS ETQATLATAN
410 420 430 440 450
FFGMISIIMQ LRKVCNHPDL FEGRPIISSF DMAGVDIQLS SSICSMFSPG
460 470 480 490 500
PYSSVDLCAL GLIFTHLDFN MVSWECDEVK AIATPSRLIE ERANLANIED
510 520 530 540 550
VGPGSKHLKR LPGTNIFEEI RKSLLEGRLR EMKQRAASIA WWNSLRCRKK
560 570 580 590 600
PIYSTTLREL LTVKHPIYDI HRQKVERLSS LCSSKLGDVV LSPIERFQKM
610 620 630 640 650
TDLVESFMFA IPAARSTAPI FWCSQTRTPV FLHSTYEEKC SEMLLPLLSP
660 670 680 690 700
IRPAIVRRQL YFPDRRLIQF DCGKLQELAI LLRKLKSEGH RVLIFTQMTK
710 720 730 740 750
MLDILEAFIN LYGYTYMRLD GSTQPEDRQT LMQRFNTNPK IFIFILSTRS
760 770 780 790 800
GGVGINLVGA DTVIFYDSDW NPAMDQQAQD RCHRIGQTRE VHIYRLISES
810 820 830 840 850
TIEENILKKA NQKRALDDLV IQSGGYNTEF FKKLDPMELF SGHKTLQIKN
860 870 880 890 900
MQREKNNNNG NEVSLSNADV EAALKYAEDE ADYMALKKVE QEEAVDNQEF
910 920 930 940 950
TEEAIGRLED DEFVNDDDMK ADEPTDHEMT TYCKEGEVNL DENDCIEERA
960 970 980 990 1000
VTFTGNKDDV DMLADVKQMA AAAAAAGQAI SSFENQLRPI DRYAVRFLEL
1010 1020 1030 1040 1050
WDPIIDKAAL ESQVRFQETE WELDRIEKYK DEMEAEIDDD EEPLVYERWD
1060 1070 1080 1090 1100
ADFATEAYRQ QVEALTQYQL MEEKEAEAEA EANEKESADG HLDAMVCKVP
1110 1120 1130 1140 1150
RNPKSKSKKK PKKTKFKSLK KESLTSELKH MKVEASIETL SADDEDDDDD
1160 1170 1180 1190 1200
VIYPDDGTYS DTTSPYSSVQ RKRKKAELAI DIDKKRSRKN SKKFKKAPET
1210 1220 1230 1240 1250
CSFDVDSDLS GKQHGRSMEL KPYEVVSDLE QKPAGRSKMG GKISISTMPV
1260 1270 1280 1290 1300
KRVLMIKPEK LKKGNVWSRD CVPPPDSWLP QEDAILCAVV HEYGPHWSLV
1310 1320 1330 1340 1350
SETLYGMAAG GFYRGRYRHP VHCCERFREL IHRYVLSSPE YPINNEKMSN
1360 1370 1380 1390 1400
MVSGKALLKV TEDNIRMLLN VAAEQPDHEL LLQKHFTALL SAVWRVNSRA
1410 1420 1430 1440 1450
ERQQNLSSSR NALYNHGRVF NSSVNQLPSN SSKESAKRMK FTNLGHSSKL
1460 1470 1480 1490 1500
LADALHDASS RRPDDRVSYS NLSEVAPAIG EQLEITLEFQ KEEDDSLIQF
1510 1520 1530 1540 1550
PPIISLSIPS SAPLTSVNKD RAEAHHLRAS TSIAENRFRD AARACVEGDL
1560 1570 1580 1590 1600
GWVSSSAPAN DFKLRLPSKT QSLGKHKLSV SESTKPPRSK MKKTLIEHSQ
1610 1620 1630 1640 1650
GHLFAEPVSQ PLPVLSSRDP NLRFDLPPIA IQDDKDEYSI SCIEKELSAE
1660 1670 1680
MGTWDAVAHD YVLGFTSGLD DFSSLPEFTD IG
Length:1,682
Mass (Da):192,188
Last modified:December 11, 2013 - v2
Checksum:i34AC66B18A43EF89
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000339 Genomic DNA. Translation: EEE78158.2.
RefSeqiXP_002303179.2. XM_002303143.2.

Genome annotation databases

EnsemblPlantsiPOPTR_0003s01670.1; POPTR_0003s01670.1; POPTR_0003s01670.
GeneIDi7478136.
GrameneiPOPTR_0003s01670.1; POPTR_0003s01670.1; POPTR_0003s01670.
KEGGipop:POPTR_0003s01670g.

Similar proteinsi

Entry informationi

Entry nameiB9GZR8_POPTR
AccessioniPrimary (citable) accession number: B9GZR8
Entry historyiIntegrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: December 11, 2013
Last modified: June 7, 2017
This is version 57 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported