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B9GXN0 (B9GXN0_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Predicted protein EMBL EEE79818.1
Gene names
ORF Names:POPTRDRAFT_831007 EMBL EEE79818.1
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Reference proteome]
Taxonomic identifier3694 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length415 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentmembrane

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B9GXN0 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 6F61AA26CF24CF62

FASTA41546,028
        10         20         30         40         50         60 
MWAASCLASC CATCACHACT TVVSGISRRS ARIAYCGLFA LSLIVSWILR EVAAPLMEKL 

        70         80         90        100        110        120 
PWINHFHKTP DREWFETDAV LRVSLGNFMF FTILATMMVG VKNQKDPRDS LHHGGWMAKV 

       130        140        150        160        170        180 
VCWCILVILM FFLPNEIVSF YESISKFGSG LFLLVQVVLL LDFVHGWNDK WVGYDEKFWY 

       190        200        210        220        230        240 
VALFVVSLVC YVGTFAFSGL LFHWFTPSGQ DCGLNTFFIV MTLIFAFVFA IVALHPAVNG 

       250        260        270        280        290        300 
SVLPASVISL YCMYLCYSGL ASEPREYECN GLHRHSKAVS TGTLSIGLLT TVLSVVYSAV 

       310        320        330        340        350        360 
RAGSSTALLS PPSSPRAGAD KPLLPLDNKA NEQEEKEKAC KPVTYSYSFF HIIFSLASMY 

       370        380        390        400        410 
SAMLLTGWST SIGESGKLVD VGWPSVWVRI LTGWATAGLY TWSLVAPILF PEREF

« Hide

References

« Hide 'large scale' references
[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.
[2]US DOE Joint Genome Institute (JGI-PGF)
Grigoriev I.V., Terry A., Salamov A.A., Otillar R., Lou Y., Lucas S., Hammon N., Glavina del Rio T., Detter J., Kalin E., Tice H., Pitluck S., Chapman J., Putnam N.H., Brunner A., Busov V., Campbell M., Chalot M. expand/collapse author list , Covert S., Davis J., DiFazio S., Gribskov M., Gunter L., Hamberger B., Jansson S., Joshi C., Larimer F., Martin F., Napoli C., Nelson D., Ralph S., Rombauts S., Rouze P., Schrader J., Tsai C., Vahala J., Tuskan G., Rokhsar D.
Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CM000339 Genomic DNA. Translation: EEE79818.1.
RefSeqXP_002304839.1. XM_002304803.1.
UniGenePth.17774.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7461332.
KEGGpop:POPTR_831007.

Phylogenomic databases

eggNOGNOG308011.
HOGENOMHOG000165463.
ProtClustDBCLSN2679769.

Gene expression databases

ArrayExpressB9GXN0.

Family and domain databases

InterProIPR005016. TMS_TDE.
[Graphical view]
PANTHERPTHR10383. PTHR10383. 1 hit.
PfamPF03348. Serinc. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9GXN0_POPTR
AccessionPrimary (citable) accession number: B9GXN0
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: April 3, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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