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B9GVH9 (B9GVH9_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 14. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Predicted protein EMBL EEE79405.1
Gene names
ORF Names:POPTRDRAFT_413778 EMBL EEE79405.1
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]
Taxonomic identifier3694 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length429 AA.
Sequence statusFragment.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular componentmembrane

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL EEE79405.1
Non-terminal residue4291 EMBL EEE79405.1

Sequences

Sequence LengthMass (Da)Tools
B9GVH9 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: 8B0CD119BDFDEE7B

FASTA42949,553
        10         20         30         40         50         60 
TISFFFFCFL FISIDPISSQ QLSDTETDCS KRWIHIRRLP SRFNLDLLTN CSEYPLFDNF 

        70         80         90        100        110        120 
CPYLANHGLG PKTHNKSQSW YRSNPLLLEL IFHRRMLEYP CLTSDPNQAN AIYLPYYAAI 

       130        140        150        160        170        180 
DSLRYLYDPA VNNSMEHGLE LYDYLQDNEG WIWSRNHGAD HFLVMSRPAL DFSQSVDVNP 

       190        200        210        220        230        240 
PIWGTSFLEL PEFYNLTVLI VEGRAWPWQE QAVPYLTSFH PPNLGLLESW IKRVKASKRT 

       250        260        270        280        290        300 
TLLLFAGGGG VGSSPNIRRS IRNECENSSL SNSSDMRKVC DIVDCSNGVC EHDPIRYMRP 

       310        320        330        340        350        360 
MLRATFCLQP PGDTPTRRST FDGIIAGCIP VFFEDLSAKS QYGWHLPEEM YRDFAVFMPK 

       370        380        390        400        410        420 
EDIVFKGLRI LDVLMGIPRD EVRRMRERVI ELIPRVVYRK HGSSLDLRAR KDAFDIAVEG 


ALQRIHSRL

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References

[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CM000339 Genomic DNA. Translation: EEE79405.1.
RefSeqXP_002304426.1. XM_002304390.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7465523.
KEGGpop:POPTR_413778.

Phylogenomic databases

GeneTreeEPGT00070000029580.
OMAGLGPKTH.
ProtClustDBCLSN2685815.

Family and domain databases

InterProIPR004263. Exostosin.
[Graphical view]
PfamPF03016. Exostosin. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9GVH9_POPTR
AccessionPrimary (citable) accession number: B9GVH9
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: December 14, 2011
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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