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Protein
Submitted name:

Uncharacterized protein

Gene

POPTR_0002s22720g

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:POPTR_0002s22720gImported
OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
Taxonomic identifieri3694 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
ProteomesiUP000006729 Componenti: Linkage group LGII

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi3694.POPTR_0002s22720.1.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG2352.
HOGENOMiHOG000238648.
InParanoidiB9GTC2.
KOiK01595.
OMAiMDEMAII.

Family and domain databases

HAMAPiMF_00595. PEPcase_type1.
InterProiIPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamiPF00311. PEPcase. 1 hit.
[Graphical view]
PRINTSiPR00150. PEPCARBXLASE.
SUPFAMiSSF51621. SSF51621. 2 hits.
PROSITEiPS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B9GTC2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNMKRKEQAK PRTEYICLFV YSRREGRRKA MADRNLQKMA SIDAQLRLLA
60 70 80 90 100
PGKVSEDDKL VEYDALLLDR FLDILQDLHG KDIRETVHDC YELSAEYEAK
110 120 130 140 150
HDPQKLEELG RVITSLDPGD SIVVTKSFSH MLNLANLAEE VQIASRRRIK
160 170 180 190 200
LKKGDFADEN SATTESDIEE TLNRLVGQLN KSPEEVFEAL KNQTVDLVLT
210 220 230 240 250
AHPTQSVRRS LLQKHARIRN CLTQLYAKDI TPYDKQELDE ALQREIQAAF
260 270 280 290 300
RTDEIRRTPP TPQDEMRAGM SYFHETIWKG VPKFLRRLDT ALKNIGIKER
310 320 330 340 350
VPYNAPVIQF SSWMGGDRDG NPRVTPEVTR DVCLLARMMA ANLYFSQIED
360 370 380 390 400
LMFELSMWRC NEELRVRADE LHSSSKRYAK HYIEFWKQIP PNEPYRVVLG
410 420 430 440 450
NVRDKLYNTR ERSRQLLANG KSDIPEDSTF TNAEQILEPL ELCYRSLCAC
460 470 480 490 500
GDRPIADGSL LDFLRQVSTF GLSLVRLDIR QESDRHTAVL DAITKHLGIG
510 520 530 540 550
SYREWSEEHR REWLLSELRG KRPLFGPDLP KTEEIADVLD TFHVIAELPP
560 570 580 590 600
DNFGAYIISM ATSPSDVLAV ELLQRECHVQ QSLRVVPLFE KLADLEAAPA
610 620 630 640 650
AMACLFSINW YRDRIKGKQE VMIGYSDSGK DAGRLSAAWQ LYKAQEELVK
660 670 680 690 700
VAKQYGVKLT MFHGRGGTVG RGGGPTHLAI LSQPPDTIHG SLRVTVQGEV
710 720 730 740 750
IEKSFGEEHL CFRTLQRFTA ATLEHGMHPP VSPKSEWRAL MDEMAIVATK
760 770 780 790 800
EYRSIVFQEP RFVEYFRLAT PELEYGRMNI GSRPSKRKPS GGIESLRAIP
810 820 830 840 850
WIFAWTQTRF HLPVWLGFGA AFKHVIQKDT KNLHTLQEMY NQWPFFRVTI
860 870 880 890 900
DLVEMVFAKG GPGIAALYDK LLVSEELRPF GDRLRANYEE NKLFLLQIAG
910 920 930 940 950
HKDLLEGDPY LKQRLRLRDA YITTLNVCQA YTLKQIRDPD YHVTVRPHLS
960 970 980 990
KDYMESTKPA AELVKLNPTS EYAPGLEDTL ILTMKGIAAG LQNTG
Length:995
Mass (Da):113,839
Last modified:December 11, 2013 - v2
Checksum:i5FF8BC982AC8717C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000338 Genomic DNA. Translation: EEE82093.2.
RefSeqiXP_002302820.2. XM_002302784.2.

Genome annotation databases

EnsemblPlantsiPOPTR_0002s22720.1; POPTR_0002s22720.1; POPTR_0002s22720.
GeneIDi7458241.
KEGGipop:POPTR_0002s22720g.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000338 Genomic DNA. Translation: EEE82093.2.
RefSeqiXP_002302820.2. XM_002302784.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3694.POPTR_0002s22720.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiPOPTR_0002s22720.1; POPTR_0002s22720.1; POPTR_0002s22720.
GeneIDi7458241.
KEGGipop:POPTR_0002s22720g.

Phylogenomic databases

eggNOGiCOG2352.
HOGENOMiHOG000238648.
InParanoidiB9GTC2.
KOiK01595.
OMAiMDEMAII.

Family and domain databases

HAMAPiMF_00595. PEPcase_type1.
InterProiIPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamiPF00311. PEPcase. 1 hit.
[Graphical view]
PRINTSiPR00150. PEPCARBXLASE.
SUPFAMiSSF51621. SSF51621. 2 hits.
PROSITEiPS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
    Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A.
    , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
    Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NisquallyImported.

Entry informationi

Entry nameiB9GTC2_POPTR
AccessioniPrimary (citable) accession number: B9GTC2
Entry historyi
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: December 11, 2013
Last modified: July 22, 2015
This is version 43 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.