B9GIN8 (B9GIN8_POPTR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Predicted protein EMBL EEE83600.1

Gene names

ORF Names:

POPTRDRAFT_798090 EMBL EEE83600.1

Organism

Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]

Taxonomic identifier

3694 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length	667 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the class-II aminoacyl-tRNA synthetase family. RuleBase RU003746

Ontologies

Keywords
Biological process	Protein biosynthesis RuleBase RU003747
Ligand	ATP-binding RuleBase RU003747 Nucleotide-binding
Molecular function	Aminoacyl-tRNA synthetase RuleBase RU003747 Ligase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	tRNA aminoacylation for protein translation Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW aminoacyl-tRNA ligase activity Inferred from electronic annotation. Source: UniProtKB-KW nucleic acid binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B9GIN8 [UniParc]. Last modified March 24, 2009. Version 1. Checksum: 691E958BC426BFBA	FASTA	667	74,727
	10 20 30 40 50 60 MTLLLRSFPL ITLRTTRPCS LPLLQTLLKY HFPKSLSTKH TRTLVALSAA SSSSSSSSPE 70 80 90 100 110 120 TILKPQQQPK DTLLWVSRTN FCGQLSINDV GARVRLCGWV ALHRVHGGLT FFNLRDHTGI 130 140 150 160 170 180 VQVATLPDEF PDAHSIINDL RVEYVVVVEG VVRSRPVESV NKKMATGSIE VVAEHAQLLN 190 200 210 220 230 240 AVKAKLPFLV TTVDDAKDSV KEEIRLRYRC LDLRRQQMSS NIMLRHRVVK LIRRYLEDVQ 250 260 270 280 290 300 GFVEIETPIL SRSTPEGARD YLVPSRIQPG TFYALPQSPQ LFKQMLMVSG FDKYYQIARC 310 320 330 340 350 360 FRDEDLRADR QPEFTQLDME LAFTPMEDML RLNEDLIRKV FLEIKGVQLP NPFPRLTYAE 370 380 390 400 410 420 AMSRYGSDRP DTRFDLHLKD VSDIFSESSF RVFADSLKSG GIIKVLCVPS GAKSYSNTAL 430 440 450 460 470 480 KKGDIYNEAI KSGAKGLAFL KVLDNGEFEG ISALLSSLDS TNKEQLLSRC SAGPGDLILF 490 500 510 520 530 540 AVGHHSSVNK TLDRLRLFIA NQLGLNDPSR YSILWVTDFP MFEWNETEQR LEALHHPFTA 550 560 570 580 590 600 PNPEDMKDLS SARALAYDMV YNGVEIGGGS LRIYKREIQQ KVLEIVGITP EQAEAKFGYL 610 620 630 640 650 660 LEALDMGAPP HGGIAYGLDR LAMLLAGANS IRDVIAFPKT TTAQCALTRA PSEVDPQQLK DLSFRTQ

References

[1]

"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)." Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S. Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nisqually.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000337 Genomic DNA. Translation: EEE83600.1.
RefSeq	XP_002298795.1. XM_002298759.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	B9GIN8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7470766.
KEGG	pop:POPTR_798090.
Phylogenomic databases
GeneTree	EPGT00050000006677.
OMA	NIHINES.
ProtClustDB	PLN02903.
Family and domain databases
HAMAP	MF_00044_B. Asp_tRNA_synth_B. [Tree]
InterPro	IPR004364. aa-tRNA-synt_II. IPR018150. aa-tRNA-synt_II-like. IPR006195. aa-tRNA-synth_II. IPR004524. Asp-tRNA-synth_IIb_bac/mt. IPR002312. Asp/Asn-tRNA-synth_IIb. IPR004115. GAD_dom. IPR012340. NA-bd_OB-fold. IPR016027. NA-bd_OB-fold-like. IPR004365. NA-bd_OB_tRNA-helicase. [Graphical view]
Gene3D	G3DSA:3.30.1360.30. GAD_dom. 1 hit. G3DSA:2.40.50.140. OB_NA_bd_sub. 1 hit.
KO	K01876.
PANTHER	PTHR22594. aa-tRNA-synt_II. 1 hit. PTHR22594:SF5. AspS_bac. 1 hit.
Pfam	PF02938. GAD. 1 hit. PF00152. tRNA-synt_2. 1 hit. PF01336. tRNA_anti. 1 hit. [Graphical view]
PRINTS	PR01042. TRNASYNTHASP.
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit. SSF55261. SSF55261. 1 hit.
TIGRFAMs	TIGR00459. AspS_bact. 1 hit.
PROSITE	PS50862. AA_TRNA_LIGASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B9GIN8_POPTR

Accession

Primary (citable) accession number: B9GIN8

Entry history

Integrated into UniProtKB/TrEMBL:	March 24, 2009
Last sequence update:	March 24, 2009
Last modified:	December 14, 2011
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)