Skip Header

Contribute Send feedback
Read comments (?) or add your own

B9GIK6 (B9GIK6_POPTR) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 14. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
Predicted protein EMBL EEE83362.1
Gene names
ORF Names:POPTRDRAFT_174078 EMBL EEE83362.1
OrganismPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Complete proteome]
Taxonomic identifier3694 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length376 AA.
Sequence statusFragment.
Protein existencePredicted

Ontologies

Keywords
   DomainZinc-finger RuleBase RU000353
   LigandMetal-binding
Zinc
   Technical termComplete proteome
Gene Ontology (GO)
   Molecular functionzinc ion binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL EEE83362.1
Non-terminal residue3761 EMBL EEE83362.1

Sequences

Sequence LengthMass (Da)Tools
B9GIK6 [UniParc].

Last modified March 24, 2009. Version 1.
Checksum: F5A8ABA4C769E6C6

FASTA37641,777
        10         20         30         40         50         60 
RRLDRRYSRI ADDYKSLHQV TEALARAGLE SSNLIVGIDF TKSNEWTGAR SYNRRCLHHI 

        70         80         90        100        110        120 
GDGFNPYEQA ISIIGKTLAA FDEDNLIPCF GFGDASTHDQ DVFSFYPDER FCNGFEEVLS 

       130        140        150        160        170        180 
RYREIVPNLR LAGPTSFAPI IEMAMTIVEQ SAGQYHVLLI IADGQVTRSV DTEHGQLSPQ 

       190        200        210        220        230        240 
EQKTVEAIVQ ASKLPLSIIL VGVGDGPWDM MREFDDNIPA RDFDNFQFVN FTEIMSKNVD 

       250        260        270        280        290        300 
TSRKETEFAL SALMEIPSQY KATIELSILG QSKGIVSERV ALPPPLYGAA SFSSSKPSRP 

       310        320        330        340        350        360 
ASFKPSVPSY QRDSQPFSSA PPATCSTYDN QLCPICLSNS KDMAFGCGHQ TCCECGETLQ 

       370 
LCPICRSTIE TRIKLF

« Hide

References

[1]"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)."
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. expand/collapse author list , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.
Science 313:1596-1604(2006) [PubMed: 16973872] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nisqually.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CM000337 Genomic DNA. Translation: EEE83362.1.
RefSeqXP_002298557.1. XM_002298521.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7456185.
KEGGpop:POPTR_174078.

Phylogenomic databases

GeneTreeEPGT00070000028159.
OMANRKSLHH.

Family and domain databases

InterProIPR010734. Copine.
IPR002035. VWF_A.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
Gene3DG3DSA:3.30.40.10. Znf_RING/FYVE/PHD. 1 hit.
PfamPF07002. Copine. 1 hit.
[Graphical view]
SMARTSM00184. RING. 1 hit.
SM00327. VWA. 1 hit.
[Graphical view]
PROSITEPS50089. ZF_RING_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB9GIK6_POPTR
AccessionPrimary (citable) accession number: B9GIK6
Entry history
Integrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: December 14, 2011
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info