B9GII5 (B9GII5_POPTR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Predicted protein EMBL EEE83120.1

Gene names

ORF Names:

POPTRDRAFT_172325 EMBL EEE83120.1

Organism

Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa) [Reference proteome]

Taxonomic identifier

3694 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › fabids › Malpighiales › Salicaceae › Saliceae › Populus

Protein attributes

Sequence length	242 AA.
Sequence status	Fragment.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the UPP synthase family. RuleBase RU003962

Ontologies

Keywords
Molecular function	Transferase RuleBase RU003962
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	dolichol biosynthetic process Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Cellular_component	chloroplast Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Molecular_function	dehydrodolichyl diphosphate synthase activity Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	EMBL EEE83120.1
	Non-terminal residue	242	1	EMBL EEE83120.1

Sequences

	Sequence		Length	Mass (Da)
	B9GII5 [UniParc]. Last modified March 24, 2009. Version 1. Checksum: 42F391E28D6F501F	FASTA	242	27,760
	10 20 30 40 50 60 LPEGLRREVM PRHVAVIMDG NAKWARQRGF SAASAGHEAG GRSLRELVKS CCEWGIRVLT 70 80 90 100 110 120 VFAFSYDNWT RPKMEVVFLL SLFERMLQSE LDNFMRKGIR VSTIGDSSRL PESLKKLISD 130 140 150 160 170 180 IEEKTRDNCR LHLILAVSYS GKYDVTQACK SIAHKVKDGI VQLEDIDESL LEQELETNCA 190 200 210 220 230 240 QYPCPDLLIR TSGELRISNF LLWQLAYTEL FFAEALWPDF GKAEFIEALT SYQQRQRRYG GR

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)." Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W., Brun A. , Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M., Couturier J., Covert S., Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S. Science 313:1596-1604(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nisqually.
[2]	US DOE Joint Genome Institute (JGI-PGF) Grigoriev I.V., Terry A., Salamov A.A., Otillar R., Lou Y., Lucas S., Hammon N., Glavina del Rio T., Detter J., Kalin E., Tice H., Pitluck S., Chapman J., Putnam N.H., Brunner A., Busov V., Campbell M., Chalot M. , Covert S., Davis J., DiFazio S., Gribskov M., Gunter L., Hamberger B., Jansson S., Joshi C., Larimer F., Martin F., Napoli C., Nelson D., Ralph S., Rombauts S., Rouze P., Schrader J., Tsai C., Vahala J., Tuskan G., Rokhsar D. Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Nisqually.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000337 Genomic DNA. Translation: EEE83120.1.
RefSeq	XP_002298315.1. XM_002298279.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	3694.gw1.I.925.1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7478535.
KEGG	pop:POPTR_172325.
Phylogenomic databases
eggNOG	COG0020.
HOGENOM	HOG000006054.
KO	K11778.
ProtClustDB	CLSN2713627.
Family and domain databases
Gene3D	3.40.1180.10. 1 hit.
HAMAP	MF_01139. ISPT.
InterPro	IPR001441. UPP_synth-like. IPR018520. UPP_synth-like_CS. [Graphical view]
PANTHER	PTHR10291. PTHR10291. 1 hit.
Pfam	PF01255. Prenyltransf. 1 hit. [Graphical view]
SUPFAM	SSF64005. UPP_synth. 1 hit.
TIGRFAMs	TIGR00055. uppS. 1 hit.
PROSITE	PS01066. UPP_SYNTHASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B9GII5_POPTR

Accession

Primary (citable) accession number: B9GII5

Entry history

Integrated into UniProtKB/TrEMBL:	March 24, 2009
Last sequence update:	March 24, 2009
Last modified:	May 29, 2013
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)